View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0641_low_68 (Length: 237)
Name: NF0641_low_68
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_68 |
 | |
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| [»] scaffold0121 (1 HSPs) |
| | |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25471555 - 25471781
Alignment:
| Q |
1 |
gtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25471555 |
gtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaa |
25471654 |
T |
|
| Q |
101 |
actttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25471655 |
actttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactc |
25471754 |
T |
|
| Q |
201 |
tttgatctatattccttaacatctctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
25471755 |
tttgatctatattccttaacatctctg |
25471781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 25412 - 25256
Alignment:
| Q |
65 |
acatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctag |
164 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||| ||| | || |||||| |||| | ||||||| || |||||||| ||| | ||||||||||||| |
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| T |
25412 |
acatcagaaggagtaagagataatcttggtataaaaaatttcttgcatatattgcttcgaaatatgacatttccttcaagcacaaatttacccattctag |
25313 |
T |
|
| Q |
165 |
ttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
| || || |||||||| || ||| |||||||| ||||||||||||||||||||||| |
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|
| T |
25312 |
taatgattagtcttgtgccattgcataatcctgatctttgatctatattccttaaca |
25256 |
T |
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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 9270690 - 9270540
Alignment:
| Q |
71 |
gaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttatta |
170 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| || |||||||||||| | |||||||||| || ||||| ||| | ||| |||||| ||||||| |
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| T |
9270690 |
gaaggtgtaagagataatcttggtataaaatctttctcacctatattactttcagatatgacctttccatcaagcacaaatatacacattcttgttatta |
9270591 |
T |
|
| Q |
171 |
tcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
||||||||||| |||||||| ||| ||| ||||||||||||||||||| |
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|
| T |
9270590 |
gtagtcttgtaccattgaataaccctgatctgtgatctatattccttaaca |
9270540 |
T |
|
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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47507703 - 47507487
Alignment:
| Q |
1 |
gtcattgcaaatgaaacaactatcagaaattgtctctattgaattaaacataaaagaaatcctaacatctgaaggtgtaagagataaccttggtataaaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||| | | |||| | |||| || || ||| ||| ||| ||||| |||||||||||| |
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|
| T |
47507703 |
gtcattgcgaatgaaacaactatcagaaactgtctccgttgaaatt----tgaaaggagtcctgacgtcggaacgtgcaagggataatcttggtataaaa |
47507608 |
T |
|
| Q |
101 |
actttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactc |
200 |
Q |
| |
|
||||| |||||||||||||||| | |||||| || ||||||| ||| | |||||||| | ||||||| ||||||||||| ||| |||| | | || |
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|
| T |
47507607 |
actttctcgcctatattacttcgagatatgagatttccttcaaacacaaatttacccatcatgattattattagtcttgtaccattgcataagcgtgatc |
47507508 |
T |
|
| Q |
201 |
tttgatctatattccttaaca |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47507507 |
tttgatctatattccttaaca |
47507487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 50938752 - 50938821
Alignment:
| Q |
79 |
aagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaaca |
148 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| || ||||||| | |||| ||||| ||||||||||| |
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|
| T |
50938752 |
aagagataacctgggtatgaaaactttttcgccgatgttacttccatatataacctttgcttcaagaaca |
50938821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 56476111 - 56476168
Alignment:
| Q |
65 |
acatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttc |
122 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
56476111 |
acatctgaaggagatagagataaccttggtataaacactttgtcaccgatattacttc |
56476168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 219 - 363
Alignment:
| Q |
77 |
gtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtc |
176 |
Q |
| |
|
||||||||||| |||| ||||||||| || || |||||||| |||| | |||||||||| |||||||| ||| | ||||||||| | |||| || |||| |
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|
| T |
219 |
gtaagagataatcttgatataaaaacgttctcacctatattgcttccagatatgacctttccttcaagcacaaatttacccattatggttacgattagtc |
318 |
T |
|
| Q |
177 |
ttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
|||| | ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
319 |
ttgtgtcattgcataatcctgatctttgatctatattccttaaca |
363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 4649202 - 4649346
Alignment:
| Q |
77 |
gtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtc |
176 |
Q |
| |
|
||||||||||| |||| ||||||||| || || |||||||| |||| | |||||||||| |||||||| ||| | ||||||||| | |||| || |||| |
|
|
| T |
4649202 |
gtaagagataatcttgatataaaaacgttctcacctatattgcttccagatatgacctttccttcaagcacaaatttacccattatggttacgattagtc |
4649301 |
T |
|
| Q |
177 |
ttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
|||| | ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4649302 |
ttgtgtcattgcataatcctgatctttgatctatattccttaaca |
4649346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 34417210 - 34417333
Alignment:
| Q |
74 |
ggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatca |
173 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||||||| |||||||||| | | || ||| | |||||||||||| | || |||||||||||||| || | |
|
|
| T |
34417210 |
ggtgaaagagataacctgggtatgaacactttttcgccaatattacttccagaaataacccttccttcaagaacaaattttcccattctagttatgatta |
34417309 |
T |
|
| Q |
174 |
gtcttgtaccgttgaataatccta |
197 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
34417310 |
accttgttccgttgcataatccta |
34417333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 7675 - 7828
Alignment:
| Q |
71 |
gaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctag---tta |
167 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||| |||||||||||||||| | ||||| | || |||||||| ||| | |||| ||| || | ||| |
|
|
| T |
7675 |
gaaggtgcaagagataatcttagtataaaaactttctcgcctatattacttccagatatggcatttccttcaagcacaaatttactcatcctggttatta |
7774 |
T |
|
| Q |
168 |
ttatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
|||| ||||||||||| ||| |||| ||| | ||||||||||||||||||||| |
|
|
| T |
7775 |
ttattagtcttgtaccattgcataagccttatatttgatctatattccttaaca |
7828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 219
Target Start/End: Complemental strand, 5337774 - 5337619
Alignment:
| Q |
65 |
acatctgaaggtgtaagagataaccttggtataaaaactttt-tcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattcta |
163 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||||| ||| | || |||||| |||| | |||||||||| |||||||| | | | ||||| |||||| |
|
|
| T |
5337774 |
acatcagaaggagtaagagataatcttagtataaaaaaatttcttgcatatattgcttcgaaatatgacctttccttcaagcataaatttaccaattcta |
5337675 |
T |
|
| Q |
164 |
gttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaa |
219 |
Q |
| |
|
||||| || |||||||| || ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5337674 |
gttatgattagtcttgtgccattgcataatcctgatctttgatctatattccttaa |
5337619 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 43731710 - 43731805
Alignment:
| Q |
126 |
atatgaccttcccttcaagaacatacttacccattctagttattatcagtcttgtaccgttgaataatcctactctttgatctatattccttaaca |
221 |
Q |
| |
|
|||||||||| |||||||| ||| | ||| ||||||||||||| || |||||||| | ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
43731710 |
atatgacctttccttcaagcacaaatttatccattctagttatgattagtcttgtgtcattgcataatcctgatctttgatctatattccttaaca |
43731805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 32812935 - 32813053
Alignment:
| Q |
79 |
aagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattctagttattatcagtctt |
178 |
Q |
| |
|
|||||||||||| ||||||||||||| || || | |||||||| | |||| || || |||||||| ||| |||| ||||| |||||||| || | |||| |
|
|
| T |
32812935 |
aagagataacctgagtataaaaactttctcaccaacattacttccaaatatcacttttccttcaagcacaaactttcccatcctagttatgattaatctt |
32813034 |
T |
|
| Q |
179 |
gtaccgttgaataatccta |
197 |
Q |
| |
|
|| || ||| ||||||||| |
|
|
| T |
32813035 |
gttccattgcataatccta |
32813053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 26701306 - 26701410
Alignment:
| Q |
63 |
taacatctgaaggtgtaagagataaccttggtataaaaactttttcgcctatattacttctacatatgaccttcccttcaagaacatacttacccattct |
162 |
Q |
| |
|
||||||| || |||| |||||||||||| ||||| |||||||||||||| || ||||||| | ||| ||||| |||||| | ||| | || |||||||| |
|
|
| T |
26701306 |
taacatcagatggtgaaagagataacctgggtatgaaaactttttcgccaatgttacttcgagatacaacctttccttcatgtacaaatttccccattct |
26701405 |
T |
|
| Q |
163 |
agtta |
167 |
Q |
| |
|
|||| |
|
|
| T |
26701406 |
ggtta |
26701410 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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