View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_73 (Length: 210)
Name: NF0641_low_73
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_73 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 25359306 - 25359102
Alignment:
| Q |
9 |
agcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359306 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25359208 |
T |
|
| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaa |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | | ||||||||||| ||||| |
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| T |
25359207 |
tatgaattaactaccaaaataattgttggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25359108 |
T |
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| Q |
205 |
gatgca |
210 |
Q |
| |
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|||||| |
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| T |
25359107 |
gatgca |
25359102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 25399339 - 25399135
Alignment:
| Q |
9 |
agcagagatcataagattattttttcaagaataacaaagctat----tatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25399339 |
agcagagatcataagatt-ttttttcaagaataacaaagctatatattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgagga |
25399241 |
T |
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| Q |
105 |
tatgaattaactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaa |
204 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| ||| | | ||||||||||| ||||| |
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| T |
25399240 |
tatgaattaactaccaaaataattattggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaattagtgtgtgaaaaacatcacaa |
25399141 |
T |
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| Q |
205 |
gatgca |
210 |
Q |
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|||||| |
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| T |
25399140 |
gatgca |
25399135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 25618243 - 25618146
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaagatgca |
210 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
25618243 |
aactaccaaaataattgtgggtttaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtatgtgaaaaacaccacaagatgca |
25618146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 25650968 - 25650871
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaagatgca |
210 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||| ||| ||||||||| |
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| T |
25650968 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaataccgcaagatgca |
25650871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 25495136 - 25495042
Alignment:
| Q |
113 |
aactaccaaaataattgttga-ttgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaaga |
206 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
25495136 |
aactaccaaaataattgtggggttgaagttgtggcgtgtgtagtcgaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaaga |
25495042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25495366 - 25495282
Alignment:
| Q |
28 |
ttttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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| T |
25495366 |
ttttttcaagaataacaaaggtacaatcgagagaaccagcttgcagataa----aagctatatggacgtaccgaggatatgaattaact |
25495282 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 25651318 - 25651231
Alignment:
| Q |
25 |
ttattttttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| |
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| T |
25651318 |
ttattttttcaagaataacaaaggtactatcgagagaaccagcttgcaga----taaaagctatatggacgtaccgaagatgtgaattaact |
25651231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 6221 - 6318
Alignment:
| Q |
113 |
aactaccaaaataattgttgattgaagttgtggcgtgtgtagtctaaataactaatagatctccaaaaataattttgtgaaaaacaccacaagatgca |
210 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||| |
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| T |
6221 |
aactaccaaaataattgtgggttgaagttgtggcgtgtgtagtctaattaactaatagatctccaacaataagtgtgtgaaaaacaccacaagatgca |
6318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 5996 - 6070
Alignment:
| Q |
38 |
aataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatatgaattaact |
116 |
Q |
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|||||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5996 |
aataacaaaggtaaaatcgagagaaccagcttacagataa----aagctatatggacgtaccgaggatatgaattaact |
6070 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 322 - 426
Alignment:
| Q |
9 |
agcagagatcataagattatttt-ttcaagaataacaaagctattatggagagaaccagcttgcagataattaaaagctatatggacgtaccgaggatat |
107 |
Q |
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||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
322 |
agcagagatcataagtttttttttttcaagaataacaaagctattatggagagaaccagcttgcaga----taaaagctatatggacgtaccgaggatat |
417 |
T |
|
| Q |
108 |
gaattaact |
116 |
Q |
| |
|
| ||||||| |
|
|
| T |
418 |
ggattaact |
426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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