View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0641_low_77 (Length: 207)
Name: NF0641_low_77
Description: NF0641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0641_low_77 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 7128990 - 7129164
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7128990 |
ttttcaactcaaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataattga |
7129089 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7129090 |
aacattctctttcacattgttgccggtgttaaacaac---aactctatcaactttttcttctcctcatctcttccaat |
7129164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 7482148 - 7481974
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
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|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7482148 |
ttttcaactgaaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataattga |
7482049 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
7482048 |
aacattctctttcacattgttgccggtgttaaacaac---aactctatcaactctttcttctcctcatctcttccaat |
7481974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 7494550 - 7494376
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
7494550 |
ttttaaactcaaaatgttgtttcactttcttgtcattgtatacaaattgagcaagcgcagtcttccccagtcctccgattccaattatagaaataactga |
7494451 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7494450 |
aacattctctttcacattgttgccggtgttaaacaac---aactctatcaactttttcttctcctcatctcttccaat |
7494376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 7528267 - 7528093
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7528267 |
ttttaaactcaaaatgttcttgcactttcttgtcattgtatacaaattgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
7528168 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
7528167 |
aacattctctttcacattgttgctagtgttaaacaac---aactctatcaactctttcttttcctcatctcttccaat |
7528093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 7722264 - 7722438
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7722264 |
ttttcaactcaaaatgttgttgcacttctttgtcgccgtatacaagttgagcaagcgcagtctttccgagtcctccaattccaattatagaaataactga |
7722363 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||| |
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| T |
7722364 |
aacattctctttcaaattgttgccggtgttaaacaac---aactctatcagctctttcttctccttatctcttccaat |
7722438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 7520217 - 7520043
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
129 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7520217 |
ttttaaactcaaaatgttcttgcactttcttgtcattgtatacaaattgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactga |
7520118 |
T |
|
| Q |
130 |
aacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
7520117 |
aacattctctgtcacattgttgctagtgttaaacaac---aactctatcaactctttcttctcctcctctcttccaat |
7520043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 7713976 - 7714151
Alignment:
| Q |
30 |
ttttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaagtgca-gtctttccaagtcctccaattccaattatagaaataactg |
128 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
7713976 |
ttttcaactcaaaatgttgtttcacttctttgtcaccatataaaagttgagcaagtgcacgtctttccaagtcctccgattccaattatagaaataactg |
7714075 |
T |
|
| Q |
129 |
aaacattctctttcacattgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
7714076 |
aaacattctccttcacatcgttgccggtgttaaacaac---aactctatcaactctttcttctcctcatctcttccaat |
7714151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 7506699 - 7506640
Alignment:
| Q |
145 |
attgttgccggtgttaaacaacaaaaactctatcaactttttcttctcctcatctcttccaat |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
7506699 |
attgttgccggtgttaaacaacaa---ctctatcaactctttcttctcctcatctcttccaat |
7506640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 18035190 - 18035241
Alignment:
| Q |
62 |
tcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaa |
113 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || | ||||||||| |||| |
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| T |
18035190 |
tcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatgccaa |
18035241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 16750324 - 16750392
Alignment:
| Q |
66 |
tgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaattatagaaataactgaaacatt |
135 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
16750324 |
tgtacacaagttgagcaa-tgcggtctttccaagtcctccaattccaatgatggaaataactgaaacatt |
16750392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 4497279 - 4497228
Alignment:
| Q |
62 |
tcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | ||||||||| |||| |
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| T |
4497279 |
tcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatgccaa |
4497228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 4528530 - 4528479
Alignment:
| Q |
62 |
tcattgtatacaagttgagcaagtgcagtctttccaagtcctccaattccaa |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || | ||||||||| |||| |
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| T |
4528530 |
tcattgtagacaagttgagcaagtgcagtcttacctaatcctccaatcccaa |
4528479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 10184288 - 10184242
Alignment:
| Q |
38 |
tcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
|||||||||||||| |||||| | |||||||| |||||||||||||| |
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| T |
10184288 |
tcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaag |
10184242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 10260744 - 10260698
Alignment:
| Q |
38 |
tcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
|||||||||||||| |||||| | |||||||| |||||||||||||| |
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| T |
10260744 |
tcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaag |
10260698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 10032055 - 10032003
Alignment:
| Q |
32 |
ttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||||||| |||||||| ||||| |
|
|
| T |
10032055 |
ttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag |
10032003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 10126980 - 10126928
Alignment:
| Q |
32 |
ttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||||||| |||||||| ||||| |
|
|
| T |
10126980 |
ttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag |
10126928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 10363815 - 10363867
Alignment:
| Q |
32 |
ttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||||||| |||||||| ||||| |
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|
| T |
10363815 |
ttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag |
10363867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 10663578 - 10663526
Alignment:
| Q |
32 |
ttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||||||| |||||||| ||||| |
|
|
| T |
10663578 |
ttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaag |
10663526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 11769286 - 11769234
Alignment:
| Q |
32 |
ttcaactcaaaatgttgttgcacttctctgtcattgtatacaagttgagcaag |
84 |
Q |
| |
|
||||| ||||||| |||||| |||||| | |||||||| |||||||||||||| |
|
|
| T |
11769286 |
ttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaag |
11769234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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