View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_high_1 (Length: 595)
Name: NF0642_high_1
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_high_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 3 - 498
Target Start/End: Complemental strand, 10503881 - 10503381
Alignment:
| Q |
3 |
aggaggagcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcccaaatgattctagtagatggg |
102 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503881 |
aggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcttctgtgaagtgggaaccatcccaaatgattctagtagatggg |
10503782 |
T |
|
| Q |
103 |
tttttacacgatccagcaacaatttttgtaccatttatgtttatgatttctccacagccaacacgaatgttgtactttcctccatagccacaacatgcca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10503781 |
tttttacacgatccagcaacaatttttgtaccatttatgtttatggtttctccacagccaacacgaatgttgtactttcctccatagccacaacatgcca |
10503682 |
T |
|
| Q |
203 |
catgtggaagctcaaatcctacatattaatgaagctttaaaatcaaattaataacatatataaattaatttacatag-ttttggaattgaagtgaaatta |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| |
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| T |
10503681 |
catgtggaagctcaaatcctacatattaatgaagctttaaaatcaaattaataacatatataaattaatgtacatagtttttgaaattgcagtgaaatta |
10503582 |
T |
|
| Q |
302 |
ttagaatcattgtgaaccactgtgatt----nnnnnnnnnnnnnncactttagaggtttaacaaaattacagtgtcattatgataatgctaaactcaccg |
397 |
Q |
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| T |
10503581 |
ttagaattacactgaaccactgtgatttaaaaaaaataaaaaatacattttagaggtttaacaaaattatagtgtcactatgataatgttaaactcaccg |
10503482 |
T |
|
| Q |
398 |
tcaatcaaaataaacactaattttaaaatgacatcatattgacttggcttaccatannnnnnnggattttgaaaaagagagtacttaggagagtaaatat |
497 |
Q |
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| T |
10503481 |
tcaatcaaaacaaatagtaatttaaaaatggagtcatcttgatttggctcaccatatttttttggattttgaaaaagagagtacttaggagagtagatat |
10503382 |
T |
|
| Q |
498 |
c |
498 |
Q |
| |
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| T |
10503381 |
c |
10503381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 39 - 234
Target Start/End: Complemental strand, 10509254 - 10509059
Alignment:
| Q |
39 |
aaagacaatcttgttagctgcctctgtgaagtgggaaccatcccaaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccattt |
138 |
Q |
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||||||||||| ||||||||| |||||| | || ||||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||||||| |
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| T |
10509254 |
aaagacaatctcgttagctgcttctgtgtaatgaacaccatcccatatgattctagttgatggatttttgcatgaacctgcaacaatttttgtaccattt |
10509155 |
T |
|
| Q |
139 |
atgtttatgatttctccacagccaacacgaatgttgtactttcctccatagccacaacatgccacatgtggaagctcaaatcctacatattaatga |
234 |
Q |
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| T |
10509154 |
atgtttatggatgctccacaaccaacaccaatgttatactctcctccatagccacaacatgccacaaatggaagctcgaatcctacatattaatga |
10509059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 10500797 - 10500564
Alignment:
| Q |
16 |
aaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcccaaatgattctagtagatgggtttttacacgatc |
115 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||| | || | ||||||||| || |||||||| ||||| |||||||| || | |
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| T |
10500797 |
aaagctccattagagatttgatcaaagacaatcttgttagctgcctctgtgtaatgagtaccatcccatattattctagttgatggttttttacatgaac |
10500698 |
T |
|
| Q |
116 |
cagcaacaatttttgtaccatttatgtttatgatttctccacagccaacacgaat------gttgtactttcctccatagccacaacatgccacatgtgg |
209 |
Q |
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| T |
10500697 |
ccacaacagtgtttgtaccatttatgtttatggttgctccacaaccagcacgaatgttatagttgtactttcctccattgccacaacaagccaccagtgg |
10500598 |
T |
|
| Q |
210 |
aagctcaaatcctacatattaatgaagctttaaa |
243 |
Q |
| |
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||| ||||| ||||||| ||||| ||| |||||| |
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| T |
10500597 |
aagttcaaaccctacatgttaatcaagatttaaa |
10500564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 10486358 - 10486122
Alignment:
| Q |
15 |
gaaagctccggtagatatttgatcaaagacaatcttgttagctgcctctgtgaagtgggaaccatcccaaatgattctagtagatgggtttttacacgat |
114 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||| ||||||||||||||| | |||| |||||||| || |||||||||||||| |||| ||||| |
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| T |
10486358 |
gaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcccatattattctagtagatggacttttgcacgaa |
10486259 |
T |
|
| Q |
115 |
ccagcaacaatttttgtaccatttatgtttatgatttctccacagccaacacgaat------gttgtactttcctccatagccacaacatgccacatgtg |
208 |
Q |
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|| ||| |||| ||||||||||||| |||||| |||||||||| | | ||||| | |||||||| ||||||||||||||||||||||| ||| |
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| T |
10486258 |
cccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattgtcatagttgtactcccctccatagccacaacatgccactagtg |
10486159 |
T |
|
| Q |
209 |
gaagctcaaatcctacatattaatgaagctttaaaat |
245 |
Q |
| |
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| T |
10486158 |
gaagctcaaaccctagattgcaatgaagctttaaaat |
10486122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 10500392 - 10500355
Alignment:
| Q |
461 |
ggattttgaaaaagagagtacttaggagagtaaatatc |
498 |
Q |
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| T |
10500392 |
ggattttgaaaaagagagtacttaggagagtagatatc |
10500355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 492
Target Start/End: Complemental strand, 10485940 - 10485909
Alignment:
| Q |
461 |
ggattttgaaaaagagagtacttaggagagta |
492 |
Q |
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| T |
10485940 |
ggattttgaaaaagagagtacttaggagagta |
10485909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 35850794 - 35850844
Alignment:
| Q |
545 |
acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatc |
595 |
Q |
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| T |
35850794 |
acaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgatc |
35850844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 550 - 595
Target Start/End: Original strand, 35841182 - 35841227
Alignment:
| Q |
550 |
aatccctagaatcatcgtccatcacatcttgtgattcctcttgatc |
595 |
Q |
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| T |
35841182 |
aatccctagaatcatcgtccataacatctcgtgaatcctcttgatc |
35841227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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