View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_high_10 (Length: 322)
Name: NF0642_high_10
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 43408132 - 43408444
Alignment:
| Q |
1 |
cagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaacatctgtcaaagaaagattagtggttgctg |
100 |
Q |
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| T |
43408132 |
cagcaggaaagtggttttgttgttgggaagagatggtggattgggcctagggcaaatccaggtccaacaacatctgtcaaagaaagattagtggttgctg |
43408231 |
T |
|
| Q |
101 |
ttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgaggaggagatcagccctaattcacactcaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408232 |
ttggttacttaaaagagtacacaaagaactcatccaacaacgtccttattcagatatgggtacctatgaggaggagatcagccctaattcacactcaaaa |
43408331 |
T |
|
| Q |
201 |
ccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttcatgttcgtttctttagaagccatgactatccgcgtcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408332 |
ccactaccttcagcaggagtcatcatctgcacctgtttctgtgaatccaaacatgaacgttcatgttcgtttctttagaagccatgactatccgcgtcat |
43408431 |
T |
|
| Q |
301 |
cagcagcaacagc |
313 |
Q |
| |
|
||||||||||||| |
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| T |
43408432 |
cagcagcaacagc |
43408444 |
T |
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