View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_high_2 (Length: 574)
Name: NF0642_high_2
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 30 - 545
Target Start/End: Original strand, 47625327 - 47625842
Alignment:
| Q |
30 |
ccatttgctctatgcagagagtgtattggttttgcaacacaaaaaattccatcatcttgtccttcttctaaagaagctgtgatctggtacaacgagtgtt |
129 |
Q |
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| T |
47625327 |
ccatttgctctatgcagagagtgtattggttttgcaacacaaaaaattccatcatcttgtccttcttctaaagaagctgtgatctggtacaacgagtgtt |
47625426 |
T |
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| Q |
130 |
tgttaaggtattcctacagattcatcttcatgaaaatggaaacatggcctagatacaagatcgagattccaatgggggaccctgttttgttacagagtaa |
229 |
Q |
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| T |
47625427 |
tgttaaggtattcctacagattcatcttcatgaaaatggaaacatggcctagatacaagatcgagattccaatgggggaccctgttttgttacagagtaa |
47625526 |
T |
|
| Q |
230 |
aagattttactctgctttaagatctgttttgaatgttcttccaaaagaagctgcactttctcttggtggttttaacaagtatgctgtgaagcaagaaaat |
329 |
Q |
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| T |
47625527 |
aagattttactctgctttaagatctgttttgaatgttcttccaaaagaagctgcactttctcttggtggttttaacaagtatgctgtgaagcaagaaaat |
47625626 |
T |
|
| Q |
330 |
gcttctgccagtgtaacgctatatggtcttgctcagtgcacaccggacttgtcagccggagattgtaggcggtgtattgaggttgcggtggtagaatttc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625627 |
gcttctgccagtgtaacgctatatggtcttgctcagtgcacaccggacttgtcagccggagattgtaggcggtgtattgaggttgcggtggtagaatttc |
47625726 |
T |
|
| Q |
430 |
ctaaggattgttgtggtggtagcataggggaaactgttttctttccaagttgttttgttaggtttgaaacttatccgttttatcagcattcagagacctc |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625727 |
ctaaggattgttgtggtggtagcataggggaaactgttttctttccaagttgttttgttaggtttgaaacttatccgttttatcagcattcagagacctc |
47625826 |
T |
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| Q |
530 |
agcagcagcagcaaca |
545 |
Q |
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| T |
47625827 |
agcagcagcaacaaca |
47625842 |
T |
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