View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_10 (Length: 342)
Name: NF0642_low_10
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 42874946 - 42875109
Alignment:
| Q |
79 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
178 |
Q |
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| T |
42874946 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42875045 |
T |
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| Q |
179 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagag |
242 |
Q |
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| T |
42875046 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagag |
42875109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 42884077 - 42884240
Alignment:
| Q |
79 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
178 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42884077 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42884176 |
T |
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| Q |
179 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagag |
242 |
Q |
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| T |
42884177 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagag |
42884240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 42890355 - 42890192
Alignment:
| Q |
79 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttagtgagaccaagtttcaatccttcttccatggattcccaaacacc |
178 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42890355 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42890256 |
T |
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| Q |
179 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagag |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42890255 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagag |
42890192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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