View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_14 (Length: 295)
Name: NF0642_low_14
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 53942662 - 53942867
Alignment:
| Q |
1 |
aaatgacaatcctttcttcactctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaacttctaaccttagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53942662 |
aaatgacaatcctttcttcactctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaatttctaaccttagaac |
53942761 |
T |
|
| Q |
101 |
tcaaatccaatcctatgcttgttccacaaacatttgcacccaaaaaatcgacacctctttgatcacaatcgctgaatctttctacgacgatgaattctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
53942762 |
tcaaatccaatcctatgcttgttccacaaacatttgcacccaaaaaatcgacacctctttgatcacaatcgctgaatctttctacgatgatgaattctgg |
53942861 |
T |
|
| Q |
201 |
gctgct |
206 |
Q |
| |
|
|||||| |
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|
| T |
53942862 |
gctgct |
53942867 |
T |
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