View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_16 (Length: 286)
Name: NF0642_low_16
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 266
Target Start/End: Complemental strand, 35631992 - 35631766
Alignment:
| Q |
40 |
aaacaagaattaggagtatataagaagaacaccattgtttctttctttatctctgcatgttgttgagctctgaac-tacatacatacatacaaatta--- |
135 |
Q |
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| T |
35631992 |
aaacaagaattaggagtatataagaagaacaccattgtttctttct----ctctgcatgttgttgagctctgaacatacatacatacatacaaattagta |
35631897 |
T |
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| Q |
136 |
ttacaaaaaattacagctaagtttgtatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaa |
235 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35631896 |
ttacaaaaaattacagctaagtttttatctggtaatttcactccttttcaatttcatcattcatcatcatcacactatcacgtagctggtcatttctcaa |
35631797 |
T |
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| Q |
236 |
ccatttaatcaatcttaattaggatgagacc |
266 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
35631796 |
ccacttaatcaatcttaattaggatgagacc |
35631766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 35636590 - 35636509
Alignment:
| Q |
176 |
ctccttttcaatttcatcattcatcatcatcacactatcacgta-gctggtcatttctcaaccatttaatcaatcttaatta |
256 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||| ||| || |||| |||||| |||||||||||| |||| |
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| T |
35636590 |
ctccttttcaatttcatcattcaaaatcatcacactatcatgtacgctcttcttttcccaaccacttaatcaatctttatta |
35636509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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