View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_19 (Length: 238)
Name: NF0642_low_19
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 30499280 - 30499144
Alignment:
| Q |
29 |
attatacacattgaaaccaaatcaaat------cacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacaccta |
122 |
Q |
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| T |
30499280 |
attatacgcattgaaatcaaatcaaatatcacacacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacaccta |
30499181 |
T |
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| Q |
123 |
catcacaatttattatattcccttttcttcacttcat |
159 |
Q |
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| T |
30499180 |
catcacaatttattatattcccttttcttcacttcat |
30499144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 31214608 - 31214681
Alignment:
| Q |
85 |
ttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatattcccttttcttcacttca |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31214608 |
ttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatattcccttttcttcacttca |
31214681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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