View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0642_low_21 (Length: 219)

Name: NF0642_low_21
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0642_low_21
NF0642_low_21
[»] chr7 (10 HSPs)
chr7 (64-218)||(48161903-48162056)
chr7 (69-219)||(34390018-34390168)
chr7 (69-174)||(35745747-35745852)
chr7 (1-73)||(48168017-48168089)
chr7 (69-142)||(6584965-6585037)
chr7 (64-142)||(3867167-3867244)
chr7 (69-143)||(41089700-41089773)
chr7 (108-219)||(8745245-8745357)
chr7 (69-128)||(3419623-3419681)
chr7 (64-219)||(33435160-33435316)
[»] chr3 (8 HSPs)
chr3 (70-218)||(23328226-23328374)
chr3 (81-213)||(21342603-21342735)
chr3 (69-219)||(40023447-40023597)
chr3 (81-216)||(45398864-45398999)
chr3 (64-183)||(43012426-43012545)
chr3 (64-143)||(19176553-19176631)
chr3 (64-139)||(9584009-9584083)
chr3 (108-183)||(25647778-25647853)
[»] chr2 (7 HSPs)
chr2 (69-219)||(14405254-14405404)
chr2 (69-219)||(7874347-7874497)
chr2 (81-219)||(14106397-14106536)
chr2 (69-183)||(5254312-5254425)
chr2 (69-219)||(387229-387381)
chr2 (70-183)||(10173491-10173602)
chr2 (64-136)||(39338825-39338895)
[»] chr4 (5 HSPs)
chr4 (69-219)||(35341214-35341363)
chr4 (81-219)||(31050536-31050675)
chr4 (69-219)||(2825839-2825989)
chr4 (64-136)||(8255078-8255148)
chr4 (64-136)||(8268496-8268566)
[»] chr8 (4 HSPs)
chr8 (81-219)||(15821254-15821392)
chr8 (81-216)||(38577667-38577803)
chr8 (100-183)||(35816155-35816238)
chr8 (84-189)||(36630908-36631013)
[»] chr1 (7 HSPs)
chr1 (69-219)||(27031715-27031865)
chr1 (81-219)||(7857721-7857859)
chr1 (69-219)||(24658985-24659134)
chr1 (70-219)||(46814342-46814491)
chr1 (64-189)||(24684383-24684508)
chr1 (108-183)||(31290933-31291008)
chr1 (69-136)||(46692779-46692844)
[»] chr5 (3 HSPs)
chr5 (76-219)||(29087544-29087687)
chr5 (64-143)||(7162269-7162347)
chr5 (108-184)||(8297560-8297636)
[»] chr6 (1 HSPs)
chr6 (108-188)||(20701712-20701792)
[»] scaffold0050 (1 HSPs)
scaffold0050 (108-183)||(36801-36876)
[»] scaffold0343 (1 HSPs)
scaffold0343 (64-129)||(5756-5820)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 48162056 - 48161903
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 163  Q
    |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  48162056 cagttctttggctcaaattgatttttggacttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattgggtta- 48161958  T
Q  164 gagcttttcgaatgtggctcgacttgtcgttgaagtctgggagttttattttgag 218  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  48161957 gagcttttcgaatgtggctcgacttggcgttgaagtctgagagttttattctgag 48161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 34390018 - 34390168
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    |||||||| || ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||| | |||||||||    
T  34390018 ctttggcttaagttggtttttgggcttttatttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagct 34390116  T
Q  169 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    |||| |||||||||| |||| |  |||| |||||||||||||||||||||||    
T  34390117 tttcaaatgtggctcaacttgggtgttgtagtctgggagttttattttgagg 34390168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 35745852 - 35745747
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  35745852 ctttggctcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagct 35745753  T
Q  169 tttcga 174  Q
    ||||||    
T  35745752 tttcga 35745747  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48168017 - 48168089
Alignment:
Q  1 ttgtagactcgcgactaaagggacaagttgataaggaggattttggatctattttacagattgcagtactttg 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48168017 ttgtagactcgcgactaaagggacaagttgataaggaggattttggatctattttacagattgcagtactttg 48168089  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 6584965 - 6585037
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaa 142  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  6584965 ctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaa 6585037  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 3867167 - 3867244
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaa 142  Q
    |||| ||||| ||||| |||||||||||||||||| ||| ||||||||  |||||||||||||||| |||||| |||||    
T  3867167 cagttctttgactcaagttggtttttgggcttttgcttt-gtgctcttgcggtggatcagaggtcgcgaggttatggaa 3867244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 41089773 - 41089700
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 143  Q
    ||||| ||||| |||||||||| ||||||||||| ||| ||||| |||||||| ||||||| |||||||||||||    
T  41089773 ctttgactcaagttggtttttgagcttttgtttt-gtgatctttcggtggatcggaggtcgcgaggttgtggaag 41089700  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 8745245 - 8745357
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc-gacttgtcgttgaagtctgggag 206  Q
    ||||| |||||||| ||||||||||||||||||||| ||| || || ||  | ||||||||||||| ||||||||| |  |||  ||| ||| |||||||    
T  8745245 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactgggag 8745344  T
Q  207 ttttattttgagg 219  Q
    ||| |||||||||    
T  8745345 tttaattttgagg 8745357  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 3419681 - 3419623
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtc 128  Q
    ||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||||||    
T  3419681 ctttgactcaagttggtttttgggcttt-gtttctgtgctctttcggtggatcagaggtc 3419623  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 33435160 - 33435316
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 163  Q
    |||| ||||| ||||| || |||| ||||| |||||||| ||||||||| |||||||| ||||||| ||||||||| ||| | | || || || ||| ||    
T  33435160 cagttctttgtctcaagttcgtttgtgggcatttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcag 33435258  T
Q  164 gagcttttcgaa-tgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    | ||| |||||| ||||||||  ||| || ||||| ||||| ||||||| ||||||||    
T  33435259 gtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgagg 33435316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 23328374 - 23328226
Alignment:
Q  70 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 169  Q
    |||||||||| |||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||    
T  23328374 tttggctcaagttggtttttgagcttttgtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagctt 23328276  T
Q  170 ttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgag 218  Q
    ||||||||||||||  ||| |  |||||||||||||||||||||||||||    
T  23328275 ttcgaatgtggctcagcttgggtgttgaagtctgggagttttattttgag 23328226  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 21342603 - 21342735
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    ||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  21342603 ttggtttttaggcttttgtttt-gtgctctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtgg 21342701  T
Q  181 ctcgactt-gtcgttgaagtctgggagttttatt 213  Q
    |||||||| |  ||||||||||| ||||||||||    
T  21342702 ctcgacttgggtgttgaagtctgagagttttatt 21342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 40023597 - 40023447
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    |||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||| ||| |||||||| |||||||||||    
T  40023597 ctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagct 40023499  T
Q  169 tttcgaatgtggctcgact-tgtcgttgaagtctgggagttttattttgagg 219  Q
    |||||||||||||||  ||  |  |||| |||||||||||||||||||||||    
T  40023498 tttcgaatgtggctcagctagggtgttgtagtctgggagttttattttgagg 40023447  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 45398864 - 45398999
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  45398864 ttggtttttgggcttttgtttta-tgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtgg 45398962  T
Q  181 ctcgactt-gtcgttgaagtctgggagttttattttg 216  Q
    | | |||| |  |||||||| |||||||| |||||||    
T  45398963 cgcaacttaggtgttgaagtttgggagttctattttg 45398999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 43012426 - 43012545
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 163  Q
    |||| ||||| ||||| |||||||||| ||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||| || || || ||| ||    
T  43012426 cagttctttgactcaagttggtttttgagcttttgtttt-gtgctctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcag 43012524  T
Q  164 gagcttttcg-aatgtggctc 183  Q
    | ||| |||| ||||||||||    
T  43012525 gtgctcttcgaaatgtggctc 43012545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 19176553 - 19176631
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 143  Q
    |||| ||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||||||  ||||||||||||    
T  19176553 cagttctttgactcaagttggtttttgggcttttgattt-gtgctcttttggtggatcggaggtcgcaaggttgtggaag 19176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 9584083 - 9584009
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtg 139  Q
    |||| ||||| |||||  ||||||||||||||||| ||||||| ||||| |||||||| ||||| | |||||||||    
T  9584083 cagttctttgtctcaagatggtttttgggcttttg-ttttgtgatctttcggtggatcggaggttgcgaggttgtg 9584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 25647778 - 25647853
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 183  Q
    |||||||||||||| ||||||||||||| ||| ||||||  || || || ||||| |||||||||| | |||||||    
T  25647778 tcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctc 25647853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 14405254 - 14405404
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||  |||  ||||||| |||||||||||    
T  14405254 ctttggctcaagttggtttttgggcttttgtttt-gtgctctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagct 14405352  T
Q  169 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    | ||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  14405353 tgtcgcatgtggctcgacttgggtgttgaagtctgggagttttattttgagg 14405404  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 7874347 - 7874497
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||| ||||| |||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||||  | |||||||||| |||||||||||    
T  7874347 ctttgactcaagttggtttttgggcttttgtttt-gtgctcattcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagct 7874445  T
Q  169 tttcgaatgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    |||||||||||||||  ||| |  |||||||||| |||||||||||||||||    
T  7874446 tttcgaatgtggctcagcttgggtgttgaagtcttggagttttattttgagg 7874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 14106536 - 14106397
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||  || ||||| ||||| ||||||| |||||||||    
T  14106536 ttggtttttgggtttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtgg 14106437  T
Q  181 ctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    |||  ||| |  ||||||||||| ||||||||||||||||    
T  14106436 ctcagcttgggtgttgaagtctgagagttttattttgagg 14106397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 5254312 - 5254425
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    |||||| |||| |||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||| ||| |||||||| |||| ||||||    
T  5254312 ctttggttcaagttggttttcgggcttttgtttt-gtgctttttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagct 5254410  T
Q  169 tttcgaatgtggctc 183  Q
    |||||||||||||||    
T  5254411 tttcgaatgtggctc 5254425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 387229 - 387381
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||  |||||| |||||| ||| ||||||||  || ||| |||    
T  387229 ctttgactcaagttggtttttgagcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcaggtgct 387328  T
Q  169 tttcga-atgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
     ||||| | |||||||  ||| |  ||||  ||||||||||||||||||||||    
T  387329 cttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagg 387381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 10173602 - 10173491
Alignment:
Q  70 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 169  Q
    |||||||||| || | |||||||||||||||  |||  ||||| |||| ||| ||||||||||||| ||||||||||  || || || |  || ||||||    
T  10173602 tttggctcaagtttggttttgggcttttgttggtgt--tctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagctt 10173505  T
Q  170 ttcgaatgtggctc 183  Q
    |||| |||||||||    
T  10173504 ttcggatgtggctc 10173491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 39338895 - 39338825
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 136  Q
    |||| ||||| ||||| ||||||||||||||||   | ||||||||||| |||||||| ||||||| ||||||    
T  39338895 cagttctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtt 39338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 35341363 - 35341214
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||| ||||||||||||||||| ||| ||||||||  |||| |||||    
T  35341363 ctttggctcaagttggtttttggccttttgtttt-gtgctctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagct 35341265  T
Q  169 tttcgaatgtggctcgacttgtcgttgaagtctgggagttttattttgagg 219  Q
    |||||||||||||||   |||  |||||||| |||||||||||||||||||    
T  35341264 tttcgaatgtggctcagtttggtgttgaagtttgggagttttattttgagg 35341214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 31050675 - 31050536
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||    
T  31050675 ttggtttttgggcttttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtgg 31050576  T
Q  181 ctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    ||   ||| |  ||||||||||||  ||||||||||||||    
T  31050575 ctaagcttgggtgttgaagtctggctgttttattttgagg 31050536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 2825839 - 2825989
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    |||||||||||  |||||||||||||||| |||| || |||||| |||||||| |||||| |||||||||||||| ||| |||||||| |||||||||||    
T  2825839 ctttggctcaatgtggtttttgggcttttatttt-gtactctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagct 2825937  T
Q  169 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgagg 219  Q
    ||||||| |||| || |  | |  |||||||| |||||||||||||||||||    
T  2825938 tttcgaaggtggttcagtttgggtgttgaagtttgggagttttattttgagg 2825989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 8255078 - 8255148
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 136  Q
    |||| ||||| ||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||| ||||||    
T  8255078 cagttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtt 8255148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 8268496 - 8268566
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 136  Q
    |||| ||||| ||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||| ||||||    
T  8268496 cagttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtt 8268566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 15821392 - 15821254
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||    
T  15821392 ttggtttttgggcttttgtttt-gtgctctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagcttttcgaatgtgg 15821294  T
Q  181 ctcgact-tgtcgttgaagtctgggagttttattttgagg 219  Q
    |||  ||  |  ||||||||||||||||||||||||||||    
T  15821293 ctcagctcggatgttgaagtctgggagttttattttgagg 15821254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 38577803 - 38577667
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| |||| |||||||||||||| |||    
T  38577803 ttggtttttggacttttgtttt-gtgctctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatgg 38577705  T
Q  181 ctcgactt-gtcgttgaagtct-gggagttttattttg 216  Q
    | | |||| |  |||||||||| |||||||||||||||    
T  38577704 cgcaacttgggtgttgaagtctggggagttttattttg 38577667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 35816238 - 35816155
Alignment:
Q  100 ttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 183  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||||||| ||||| ||| ||||||||||||||||    
T  35816238 ttttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctc 35816155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 36630908 - 36631013
Alignment:
Q  84 gtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcg-aatgtggct 182  Q
    ||||||||||||||||||| ||||||||| | |||||| ||||||| |||||||||| || ||| || || || ||| ||| ||| |||| |||||||||    
T  36630908 gtttttgggcttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggct 36631006  T
Q  183 cgacttg 189  Q
    | |||||    
T  36631007 caacttg 36631013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 27031865 - 27031715
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    ||||||||||| |||||||| ||| ||||||||| ||||||||| |||||||| ||||| ||||||||||||||| ||| |||||||| ||||| |||||    
T  27031865 ctttggctcaagttggttttagggattttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagct 27031767  T
Q  169 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgagg 219  Q
    ||||||||||||||| |  | |  ||||||||||||||||||||||||||||    
T  27031766 tttcgaatgtggctcagtttggatgttgaagtctgggagttttattttgagg 27031715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 7857721 - 7857859
Alignment:
Q  81 ttggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtgg 180  Q
    ||||||||||| |||||||||| ||||||||| |||||||| | ||||||||||||||||||| ||||||| |||| ||||||||||||||  |||||||    
T  7857721 ttggtttttggccttttgtttt-gtgctctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtgg 7857819  T
Q  181 ctc-gacttgtcgttgaagtctgggagttttattttgagg 219  Q
    ||| |  | |  ||||||||||||||||||||||||||||    
T  7857820 ctcagtttgggtgttgaagtctgggagttttattttgagg 7857859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 24658985 - 24659134
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagct 168  Q
    |||||||| || |||||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||   | |||||||| |||||| ||||    
T  24658985 ctttggctgaagttggtttttgggctttggtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagct 24659083  T
Q  169 tttcgaatgtggctc-gacttgtcgttgaagtctgggagttttattttgagg 219  Q
    ||||||||||||||| | || |  ||| ||||||||||||||||||||||||    
T  24659084 tttcgaatgtggctcagcctgggagtt-aagtctgggagttttattttgagg 24659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 46814491 - 46814342
Alignment:
Q  70 tttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagctt 169  Q
    |||||||||| ||||||||| |||||||||||| ||||||||| |||||||| || ||||||||||||  |||| |||  ||||||| | ||||||||||    
T  46814491 tttggctcaagttggttttttggcttttgtttt-gtgctctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagctt 46814393  T
Q  170 ttcgaatgtggctcgac-ttgtcgttgaagtctgggagttttattttgagg 219  Q
    ||||||||||||||| | | |  |||||||| |||||||||||||| ||||    
T  46814392 ttcgaatgtggctcggcgtgggtgttgaagtatgggagttttatttcgagg 46814342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 24684508 - 24684383
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttag 163  Q
    |||| ||||| ||| | |||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| ||| || || || ||| ||    
T  24684508 cagttctttgactctagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcggtcag 24684410  T
Q  164 gagcttttcg-aatgtggctcgacttg 189  Q
    | ||| |||| |||||||||| |||||    
T  24684409 gtgctcttcgaaatgtggctcaacttg 24684383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 31291008 - 31290933
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 183  Q
    ||||| |||||||| ||||||||||||| |||||||||||||| || || || ||||||||||||| |||||||||    
T  31291008 tctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctc 31290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 46692844 - 46692779
Alignment:
Q  69 ctttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggtt 136  Q
    ||||||||||| ||||||||||||||||   | ||||||||||| ||||| || ||||||| ||||||    
T  46692844 ctttggctcaagttggtttttgggcttt--gtgttgtgctctttcggtggttcggaggtcgcgaggtt 46692779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 219
Target Start/End: Original strand, 29087544 - 29087687
Alignment:
Q  76 tcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaa 175  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| |||||| ||| || | | || || || ||| ||| ||| |||| |    
T  29087544 tcaaattggtttctgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtgctcttcgta 29087642  T
Q  176 tgtggctcgactt-gtcgttgaagtctgggagttttattttgagg 219  Q
    |||||||| |||| |  ||||  ||||||||| ||||||||||||    
T  29087643 tgtggctcaacttagatgttggggtctgggagctttattttgagg 29087687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 7162347 - 7162269
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaag 143  Q
    |||| ||||| ||||| |||||||||||| ||||||||| ||||||||| | |||||| ||||||| |||||| ||||||    
T  7162347 cagttctttgactcaagttggtttttgggtttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttatggaag 7162269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 8297560 - 8297636
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctcg 184  Q
    ||||| |||| ||| ||||||| ||||| ||||||||||  || || || || ||||||||||||| ||||||||||    
T  8297560 tctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcg 8297636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 20701792 - 20701712
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctcgactt 188  Q
    ||||| |||||||| ||||||||||||| ||||||| ||  || || || || ||||||||||||||||||||||| ||||    
T  20701792 tctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactt 20701712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 36801 - 36876
Alignment:
Q  108 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattaggttaggagcttttcgaatgtggctc 183  Q
    ||||| |||||||| |||||||||| || ||||||||||  || || || ||||||||||||||||| ||||||||    
T  36801 tctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctc 36876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 5756 - 5820
Alignment:
Q  64 cagtactttggctcaaattggtttttgggcttttgtttttgtgctcttttggtggatcagaggtcg 129  Q
    |||| ||||| ||||  |||||||||||||||| ||||||||||||||| ||| |||| |||||||    
T  5756 cagttctttgactcaggttggtttttgggcttt-gtttttgtgctctttcggtagatcggaggtcg 5820  T

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