View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0642_low_4 (Length: 539)

Name: NF0642_low_4
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0642_low_4
NF0642_low_4
[»] chr3 (24 HSPs)
chr3 (150-220)||(18405752-18405823)
chr3 (150-220)||(24085259-24085330)
chr3 (74-112)||(2341198-2341236)
chr3 (99-220)||(47132344-47132465)
chr3 (242-310)||(41452570-41452639)
chr3 (166-218)||(31365111-31365163)
chr3 (150-220)||(21367745-21367816)
chr3 (498-537)||(28103136-28103175)
chr3 (376-417)||(28102986-28103025)
chr3 (168-222)||(49556961-49557015)
chr3 (278-311)||(13804823-13804856)
chr3 (163-220)||(25447166-25447223)
chr3 (277-310)||(30750047-30750080)
chr3 (277-310)||(30923888-30923921)
chr3 (277-310)||(31010449-31010482)
chr3 (100-137)||(33883769-33883806)
chr3 (100-137)||(39602229-39602266)
chr3 (99-148)||(39980742-39980791)
chr3 (171-220)||(39980829-39980878)
chr3 (166-219)||(46886614-46886667)
chr3 (99-147)||(901937-901985)
chr3 (166-206)||(3845498-3845538)
chr3 (97-137)||(28795872-28795912)
chr3 (100-148)||(35394506-35394554)
[»] chr4 (18 HSPs)
chr4 (376-427)||(54354337-54354388)
chr4 (171-220)||(54426143-54426192)
chr4 (248-310)||(50799990-50800053)
chr4 (166-220)||(18815118-18815172)
chr4 (277-310)||(27970105-27970138)
chr4 (100-148)||(35571639-35571687)
chr4 (150-220)||(437085-437156)
chr4 (173-220)||(21731577-21731624)
chr4 (498-537)||(54353321-54353360)
chr4 (166-220)||(24169358-24169412)
chr4 (242-311)||(27123306-27123376)
chr4 (281-310)||(6978956-6978985)
chr4 (183-220)||(29126184-29126221)
chr4 (103-148)||(55084489-55084534)
chr4 (176-220)||(35571552-35571596)
chr4 (73-105)||(39137511-39137543)
chr4 (460-499)||(54354258-54354295)
chr4 (100-148)||(55414428-55414476)
[»] chr5 (17 HSPs)
chr5 (171-310)||(11700262-11700401)
chr5 (150-220)||(42500164-42500234)
chr5 (150-220)||(16937804-16937875)
chr5 (230-311)||(25705601-25705683)
chr5 (242-301)||(30515118-30515178)
chr5 (242-301)||(30555458-30555518)
chr5 (171-222)||(7674747-7674798)
chr5 (169-219)||(22209746-22209796)
chr5 (230-303)||(38047821-38047895)
chr5 (277-310)||(18700431-18700464)
chr5 (279-332)||(34117539-34117592)
chr5 (100-148)||(4014432-4014480)
chr5 (283-311)||(9104181-9104209)
chr5 (278-310)||(12467180-12467212)
chr5 (266-310)||(18704015-18704059)
chr5 (150-209)||(35445776-35445836)
chr5 (100-148)||(39105478-39105526)
[»] chr1 (26 HSPs)
chr1 (73-137)||(51190835-51190899)
chr1 (376-427)||(16099120-16099171)
chr1 (241-311)||(3244945-3245014)
chr1 (230-310)||(15581301-15581382)
chr1 (150-220)||(2295174-2295245)
chr1 (151-220)||(1432594-1432664)
chr1 (498-535)||(16099261-16099298)
chr1 (99-148)||(27820204-27820253)
chr1 (73-137)||(1232924-1232988)
chr1 (73-137)||(15477552-15477616)
chr1 (248-311)||(4868446-4868509)
chr1 (177-220)||(5721031-5721074)
chr1 (177-220)||(5741712-5741755)
chr1 (150-209)||(7028381-7028440)
chr1 (233-295)||(23373258-23373321)
chr1 (171-217)||(14385717-14385763)
chr1 (99-137)||(49938760-49938798)
chr1 (277-310)||(17628646-17628679)
chr1 (100-137)||(26779944-26779981)
chr1 (99-148)||(27820345-27820394)
chr1 (277-310)||(35350687-35350720)
chr1 (230-310)||(6292540-6292620)
chr1 (100-148)||(7137006-7137054)
chr1 (182-222)||(22416830-22416870)
chr1 (176-220)||(38247432-38247476)
chr1 (100-148)||(51695503-51695551)
[»] chr8 (15 HSPs)
chr8 (166-222)||(12496991-12497047)
chr8 (166-220)||(9130240-9130294)
chr8 (166-220)||(36963275-36963329)
chr8 (150-222)||(43717853-43717926)
chr8 (100-146)||(26473762-26473808)
chr8 (166-220)||(30251375-30251429)
chr8 (250-310)||(6950369-6950430)
chr8 (229-310)||(7878468-7878549)
chr8 (277-310)||(11183592-11183625)
chr8 (100-137)||(32131307-32131344)
chr8 (100-137)||(35749589-35749626)
chr8 (150-209)||(26771343-26771403)
chr8 (100-148)||(27028845-27028893)
chr8 (283-311)||(42597484-42597512)
chr8 (281-317)||(43709302-43709338)
[»] chr6 (13 HSPs)
chr6 (100-148)||(20368188-20368236)
chr6 (277-310)||(1669788-1669821)
chr6 (279-310)||(3155222-3155253)
chr6 (242-311)||(2460105-2460175)
chr6 (277-311)||(9667975-9668009)
chr6 (242-310)||(281802-281871)
chr6 (247-308)||(1019570-1019631)
chr6 (179-220)||(4163261-4163302)
chr6 (179-220)||(4224882-4224923)
chr6 (100-137)||(6647401-6647438)
chr6 (171-220)||(35070575-35070624)
chr6 (184-220)||(10016736-10016772)
chr6 (277-309)||(20377910-20377942)
[»] chr7 (14 HSPs)
chr7 (277-310)||(12234879-12234912)
chr7 (99-148)||(19214414-19214463)
chr7 (277-310)||(28521002-28521035)
chr7 (150-209)||(33601342-33601402)
chr7 (150-205)||(33601963-33602019)
chr7 (166-221)||(18765379-18765434)
chr7 (277-311)||(29290379-29290413)
chr7 (166-220)||(33266407-33266461)
chr7 (166-220)||(39907896-39907950)
chr7 (277-310)||(39539771-39539804)
chr7 (100-137)||(40530428-40530465)
chr7 (92-133)||(40598555-40598596)
chr7 (150-209)||(27863657-27863717)
chr7 (100-148)||(39967934-39967982)
[»] chr2 (12 HSPs)
chr2 (171-220)||(15757579-15757628)
chr2 (100-148)||(9174829-9174877)
chr2 (150-220)||(27317457-27317528)
chr2 (166-220)||(4607020-4607074)
chr2 (249-310)||(14316106-14316168)
chr2 (99-137)||(20926516-20926554)
chr2 (277-311)||(34652026-34652060)
chr2 (166-220)||(42659132-42659186)
chr2 (278-311)||(1939323-1939356)
chr2 (171-220)||(3312177-3312226)
chr2 (100-149)||(18066142-18066191)
chr2 (277-310)||(32821856-32821889)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 18405823 - 18405752
Alignment:
Q  150 gttttcataagtt-ttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||    
T  18405823 gttttcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 24085330 - 24085259
Alignment:
Q  150 gttttcataagttttgcaaag-agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| | ||||  ||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  24085330 gttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaa 24085259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 2341236 - 2341198
Alignment:
Q  74 aaagtttaattatttttgtataagctataagctatctta 112  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2341236 aaagtttaattatttttgtataagctataagctatctta 2341198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 47132344 - 47132465
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagctta-tgaggttttcataagttttgc-aaagagtctcacaaaacttatgccggtagt 196  Q
    |||||||||| ||  |||| |||||||||||||||||||  |||||| | |  |||||||||||| | | ||| ||||||||||||||  |||| ||||     
T  47132344 tataagctatattggagaagttatgaaaataagttgaaaaaagcttattaaatttttcataagttctccaaaacagtctcacaaaact--tgccagtaga 47132441  T
Q  197 taagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| ||||||||||    
T  47132442 taagctcaaataagccaatccaaa 47132465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 41452639 - 41452570
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttca 310  Q
    |||||||||||||||| |||||  ||||  ||||  ||||||||||||| ||||||||||||||||||||    
T  41452639 ataagtacttgtgagagtatttgagagaccttatagaaacaacttatgatatgtctataagctgttttca 41452570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 31365163 - 31365111
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatcca 218  Q
    |||| ||||||||||||||||||||  ||| ||||||||||||| ||||||||    
T  31365163 caaacagtctcacaaaacttatgccaatagataagctcaaataagccaatcca 31365111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 21367745 - 21367816
Alignment:
Q  150 gttttcataagttttgc-aaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| | | ||| |||| |||||||||||||| ||||| ||| ||||||||| ||||||||||    
T  21367745 gttttcataagttctcccaaacagtcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 28103136 - 28103175
Alignment:
Q  498 tttccattccacttccctcggcaccctctctgctcctcct 537  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  28103136 tttccattccacttccctcggcaccctcactgttcctcct 28103175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 28102986 - 28103025
Alignment:
Q  376 tgaaacgcaccgtttcacttaaacacatatattatattataa 417  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  28102986 tgaaacgcaccgtttcacttaaacac--atattatattataa 28103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 49556961 - 49557015
Alignment:
Q  168 aagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaata 222  Q
    |||||||||||||||||||||||  | | |||||||| |||| ||||||||||||    
T  49556961 aagagtctcacaaaacttatgccacttgataagctcagataagccaatccaaata 49557015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 13804856 - 13804823
Alignment:
Q  278 aacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||||| |||||||||||||||    
T  13804856 aacaacttatgacatgtccataagctgttttcaa 13804823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 25447223 - 25447166
Alignment:
Q  163 ttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||| |||||||||||||||||| | |||| ||| |||||||||  |||||||||    
T  25447223 ttgcaaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaa 25447166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 30750080 - 30750047
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  30750080 aaacaacttatgacatgtccataagctgttttca 30750047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 30923888 - 30923921
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||| ||||||||||||||||||||||||||||    
T  30923888 aaacagcttatgacatgtctataagctgttttca 30923921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 31010482 - 31010449
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  31010482 aaacaacttatgacatgtccataagctgttttca 31010449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 33883806 - 33883769
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaa 33883769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 39602266 - 39602229
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  39602266 ataagctatctttgagaacttatgaaaataagttgaaa 39602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 39980742 - 39980791
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    |||||||||| ||  ||||||||||||||||||||||||  |||||||||    
T  39980742 tataagctatattggagaacttatgaaaataagttgaaaaaagcttatga 39980791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 39980829 - 39980878
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||||||||  |||| |||||||||| || ||||||||||    
T  39980829 agtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaa 39980878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 46886667 - 46886614
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaa 219  Q
    |||| |||||| ||||| ||||||| | || |||||||||||||||||||||||    
T  46886667 caaacagtctctcaaaatttatgccagcagataagctcaaataaaccaatccaa 46886614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 901937 - 901985
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagcttatg 147  Q
    |||||||||| ||  ||||||||||||||||||||||||  ||||||||    
T  901937 tataagctatattggagaacttatgaaaataagttgaaaaaagcttatg 901985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 3845538 - 3845498
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaa 206  Q
    |||| |||||||||||||||||||| |||| ||||||||||    
T  3845538 caaacagtctcacaaaacttatgccagtagataagctcaaa 3845498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 28795912 - 28795872
Alignment:
Q  97 gctataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    |||||||||||| ||| |||||||||||||||||| |||||    
T  28795912 gctataagctatattagagaacttatgaaaataagctgaaa 28795872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 35394554 - 35394506
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  |||| |||||||||||||||||||  |||||||||    
T  35394554 ataagctatcttgaagaatttatgaaaataagttgaaaacagcttatga 35394506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 54354388 - 54354337
Alignment:
Q  376 tgaaacgcaccgtttcacttaaacacatatattatattataacaataaaaaa 427  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  54354388 tgaaacgcaccgtttcacttaaacacatatattataatataataataaaaaa 54354337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 54426143 - 54426192
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  54426143 agtctcacaaaacttatgccagtagataagctcaaataagccaatccaaa 54426192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 50799990 - 50800053
Alignment:
Q  248 acttgtgagattatttcggagaggttat-taaacaacttatgacatgtctataagctgttttca 310  Q
    |||||||||||| ||| |||||  | || |||||||||||||||||||||||||||||||||||    
T  50799990 acttgtgagattgtttgggagaactaatgtaaacaacttatgacatgtctataagctgttttca 50800053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 18815118 - 18815172
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||||  |||| ||||||||||||| ||||||||||    
T  18815118 caaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaa 18815172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 27970138 - 27970105
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||||||    
T  27970138 aaacaacttatgacatgtctataagctgttttca 27970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 35571687 - 35571639
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||| ||||    
T  35571687 ataagctatcttagagaacttgtgaaaataagttgaaaccagctcatga 35571639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 437156 - 437085
Alignment:
Q  150 gttttcataagttttgc-aaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||||| | ||| |||||||||||| ||||||   ||| || |||||||||||||||||||||    
T  437156 gttttcataagttttcccaaatagtctcacaaaagttatgctactagatatgctcaaataaaccaatccaaa 437085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 21731624 - 21731577
Alignment:
Q  173 tctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||||| | |||| || |||||||||||||||||||||    
T  21731624 tctcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaa 21731577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 537
Target Start/End: Complemental strand, 54353360 - 54353321
Alignment:
Q  498 tttccattccacttccctcggcaccctctctgctcctcct 537  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  54353360 tttccattccacttccctcgacaccctctctgttcctcct 54353321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 24169358 - 24169412
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||||| |||| ||| ||| ||||| ||||||||||    
T  24169358 caaatagtctcacaaaacttatgccagtagataaactctaataagccaatccaaa 24169412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 27123306 - 27123376
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||| | |||  ||||| ||||  |||||||||||||||||||| |||| |||||||||    
T  27123306 ataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaa 27123376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 6978956 - 6978985
Alignment:
Q  281 aacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||    
T  6978956 aacttatgacatgtctataagctgttttca 6978985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 29126221 - 29126184
Alignment:
Q  183 cttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  29126221 cttatgccggtagataagctcaaataagccaatccaaa 29126184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 55084534 - 55084489
Alignment:
Q  103 agctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    |||||||||| ||| |||||||||||||| |||||| |||||||||    
T  55084534 agctatcttagagagcttatgaaaataagctgaaaccagcttatga 55084489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 35571596 - 35571552
Alignment:
Q  176 cacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||||  |||| ||||||||||||| ||||||||||    
T  35571596 cacaaaacttatgctagtagataagctcaaataagccaatccaaa 35571552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 39137511 - 39137543
Alignment:
Q  73 taaagtttaattatttttgtataagctataagc 105  Q
    |||| ||||||||||||||||||||||||||||    
T  39137511 taaattttaattatttttgtataagctataagc 39137543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 499
Target Start/End: Complemental strand, 54354295 - 54354258
Alignment:
Q  460 tagaacacggtggaactttttctacagcatactcactctt 499  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  54354295 tagaacacggtggaacttt--ctacagcatactcactctt 54354258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 55414476 - 55414428
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||| ||||||  ||||||||||||||||||||||||  |||||||||    
T  55414476 ataagttatcttggagaacttatgaaaataagttgaaaaaagcttatga 55414428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 11700262 - 11700401
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaatatggtattttatctacttatataagtacttgtgagattatttcggagag 270  Q
    |||||||||||||||||||| || | ||||||||||||| | |||||||| |||   |  |||||||    ||||| |||||||||| ||||  ||||||    
T  11700262 agtctcacaaaacttatgccagtggataagctcaaataagcaaatccaaacatgcc-tcctatctaccaggataagcacttgtgagactattgaggagag 11700360  T
Q  271 gttatt-aaacaacttatgacatgtctataagctgttttca 310  Q
     ||||  ||||||||||||||||||| ||||||||||||||    
T  11700361 tttatggaaacaacttatgacatgtccataagctgttttca 11700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 42500234 - 42500164
Alignment:
Q  150 gttttcataagttttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||| | ||||||||||||||||||||||| | |||| ||||  ||||||||||||||||||    
T  42500234 gtttccataagttctccaaagagtctcacaaaacttatgtcagtaggtaagtccaaataaaccaatccaaa 42500164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 16937875 - 16937804
Alignment:
Q  150 gttttcataagtt-ttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| || |||| | |||||||||||||||||  |||| ||||||||||||| ||||||||||    
T  16937875 gttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaa 16937804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 25705601 - 25705683
Alignment:
Q  230 ttatctacttatataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttcaa 311  Q
    ||||||||| | ||||| ||||||||||| |||| || ||| |||   ||||||||| |||||||||||||||||||||||||    
T  25705601 ttatctactaacataagcacttgtgagatcatttaggtgagcttacagaaacaacttgtgacatgtctataagctgttttcaa 25705683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 30515118 - 30515178
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttat-taaacaacttatgacatgtctataag 301  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||| |||||    
T  30515118 ataagtacttgtgagattatttcggagagcttatggaaacatcttattacatgtccataag 30515178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 30555458 - 30555518
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttat-taaacaacttatgacatgtctataag 301  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||| |||||    
T  30555458 ataagtacttgtgagattatttcggagagcttatggaaacatcttattacatgtccataag 30555518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 7674747 - 7674798
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaata 222  Q
    |||||||||||||||| |  ||||| ||||||||||||| ||||||||||||    
T  7674747 agtctcacaaaacttaagtaggtagataagctcaaataagccaatccaaata 7674798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 22209796 - 22209746
Alignment:
Q  169 agagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaa 219  Q
    ||||||||| |||||||||||| |||| |||||||||||||  ||||||||    
T  22209796 agagtctcagaaaacttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 38047821 - 38047895
Alignment:
Q  230 ttatctacttatataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagct 303  Q
    |||||||||  |||||||||||||| || | ||| |||||| ||||  ||||||||||||||||||| |||||||    
T  38047821 ttatctactattataagtacttgtgtgactgtttgggagagcttatggaaacaacttatgacatgtccataagct 38047895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 18700464 - 18700431
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||| ||||||||    
T  18700464 aaacaacttatgacatgtctataagttgttttca 18700431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 34117539 - 34117592
Alignment:
Q  279 acaacttatgacatgtctataagctgttttcaaaagctccctaagataggttat 332  Q
    ||||||||||||||| | |||||||||||||| |||||| | ||||||| ||||    
T  34117539 acaacttatgacatgcccataagctgttttcataagctctccaagatagcttat 34117592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 4014480 - 4014432
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  |||||||||||||||||| |||||  |||||||||    
T  4014480 ataagctatcttggagaacttatgaaaataagctgaaaacagcttatga 4014432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 9104209 - 9104181
Alignment:
Q  283 cttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||||||||||||||||    
T  9104209 cttatgacatgtctataagctgttttcaa 9104181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 12467212 - 12467180
Alignment:
Q  278 aacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||| |||||||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttca 12467180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 18704015 - 18704059
Alignment:
Q  266 gagaggttattaaacaacttatgacatgtctataagctgttttca 310  Q
    ||||| |||| ||||||||||| ||||||||||||| ||||||||    
T  18704015 gagagcttatgaaacaacttataacatgtctataagttgttttca 18704059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 35445836 - 35445776
Alignment:
Q  150 gttttcataagttttg-caaagagtctcacaaaacttatgccggtagttaagctcaaataa 209  Q
    |||||||||| || || ||||||||||||||||||||||| | |||| ||| |||||||||    
T  35445836 gttttcataaattctgtcaaagagtctcacaaaacttatgtcagtagataaactcaaataa 35445776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 39105478 - 39105526
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  |||||||||||||||||| | ||| ||||||||||    
T  39105478 ataagctatcttggagaacttatgaaaataagctaaaaatagcttatga 39105526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 51190835 - 51190899
Alignment:
Q  73 taaagtttaattatttttgtataagctataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||| |||| |||||||||||| |||||||||||||  |||||||||||||||||| |||||    
T  51190835 taaagttaaattgtttttgtataagttataagctatcttgaagaacttatgaaaataagctgaaa 51190899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 16099120 - 16099171
Alignment:
Q  376 tgaaacgcaccgtttcacttaaacacatatattatattataacaataaaaaa 427  Q
    ||||||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  16099120 tgaaacgcaccgtttcactcaaacacgtatattatattataataataaaaaa 16099171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 3245014 - 3244945
Alignment:
Q  241 tataagtacttgtgagattatttcggagaggttattaaacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||  |||||||||| ||||||| |||||||    
T  3245014 tataagcacttg-gagattatttcggagagcttattaaacaaccaatgacatgtccataagctattttcaa 3244945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 15581382 - 15581301
Alignment:
Q  230 ttatctacttatataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||| | ||||| |||||||||||| ||| | |||| | ||  ||||||||||||||||||||||||||||||||||    
T  15581382 ttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttca 15581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 2295174 - 2295245
Alignment:
Q  150 gttttcataagttttgc-aaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| | | ||| |||||||||||||||||||| |||| ||||||||||||| ||||| ||||    
T  2295174 gttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaa 2295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 1432594 - 1432664
Alignment:
Q  151 ttttcataagtt-ttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||| || |||| |||||||||||| ||||| |||| | ||||||||||||| ||||||||||    
T  1432594 ttttcataagttcttccaaacagtctcacaaaatttatgtcggtggataagctcaaataagccaatccaaa 1432664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 16099261 - 16099298
Alignment:
Q  498 tttccattccacttccctcggcaccctctctgctcctc 535  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16099261 tttccattccacttccctcggcaccctctctgttcctc 16099298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 27820253 - 27820204
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    |||||||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  27820253 tataagctatcttaaagaatttatgaaaataagctgaaaatagcttatga 27820204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 1232988 - 1232924
Alignment:
Q  73 taaagtttaattatttttgtataagctataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||| ||||||||| ||||||| || ||||||||||  |||| ||||||||||||| |||||    
T  1232988 taaagttaaattattttcgtataagataaaagctatcttggagaatttatgaaaataagctgaaa 1232924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 15477552 - 15477616
Alignment:
Q  73 taaagtttaattatttttgtataagctataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||| |||| |||||||||| |||||||| ||| ||| |||||||||||| ||||| |||||    
T  15477552 taaagttaaattgtttttgtatatgctataagttatattagagaacttatgaatataagctgaaa 15477616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 4868509 - 4868446
Alignment:
Q  248 acttgtgagattatttcggagaggttattaaacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||||||| | |||  ||||| |||| ||||||||||||||||||| ||||| |||||||||    
T  4868509 acttgtgagactgtttgagagagtttatgaaacaacttatgacatgtcaataagttgttttcaa 4868446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 5721031 - 5721074
Alignment:
Q  177 acaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||  |||||||||||||||||| ||||||||||    
T  5721031 acaaaacttatgcaagtagttaagctcaaataagccaatccaaa 5721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 5741712 - 5741755
Alignment:
Q  177 acaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||  |||||||||||||||||| ||||||||||    
T  5741712 acaaaacttatgcaagtagttaagctcaaataagccaatccaaa 5741755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 7028381 - 7028440
Alignment:
Q  150 gttttcataagttttgcaaagagtctcacaaaacttatgccggtagttaagctcaaataa 209  Q
    ||||||||||||||| | || | |||||||||||||||| ||| || |||||||||||||    
T  7028381 gttttcataagttttcctaacaatctcacaaaacttatgtcggcagataagctcaaataa 7028440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 23373258 - 23373321
Alignment:
Q  233 tctacttatataagtacttgtgagattatttcggagaggttat-taaacaacttatgacatgtc 295  Q
    |||||| ||||||| |||||||||||| ||| |||||| ||||  |||||||||||||||||||    
T  23373258 tctactgatataagcacttgtgagattgtttgggagagcttatagaaacaacttatgacatgtc 23373321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 14385763 - 14385717
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatcc 217  Q
    |||||||| ||||||||||| |||| ||||||||||||| |||||||    
T  14385763 agtctcacgaaacttatgccagtagataagctcaaataagccaatcc 14385717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 49938760 - 49938798
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  49938760 tataagctatattagagaacttatgaaaataagttgaaa 49938798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 17628679 - 17628646
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  17628679 aaacaacttatgacatgtccataagctgttttca 17628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 26779981 - 26779944
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  26779981 ataagctatcttgaagaacttatgaaaataagttgaaa 26779944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 27820394 - 27820345
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    |||||||||||||  |||| ||||||||||||| ||||| ||||||||||    
T  27820394 tataagctatcttggagaatttatgaaaataagctgaaaatagcttatga 27820345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 35350720 - 35350687
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  35350720 aaacaacttatgacatgtccataagctgttttca 35350687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 6292620 - 6292540
Alignment:
Q  230 ttatctacttatataagtacttgtgagattatttcggagaggttattaaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||| | ||||| |||| ||||||| ||| |||||  || | ||||| ||||||||||||  ||||||||||||||    
T  6292620 ttatctactgacataagcacttttgagattgtttgggagaatttttaaaacagcttatgacatgttcataagctgttttca 6292540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 7137054 - 7137006
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  |||||||||||||||||| ||||| || |||||||    
T  7137054 ataagctatcttggagaacttatgaaaataagctgaaaataacttatga 7137006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 22416870 - 22416830
Alignment:
Q  182 acttatgccggtagttaagctcaaataaaccaatccaaata 222  Q
    ||||||||| |||| ||||||||||||| ||||||||||||    
T  22416870 acttatgccagtagataagctcaaataagccaatccaaata 22416830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 38247432 - 38247476
Alignment:
Q  176 cacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||||| |||| |||| |||||||| ||||||||||    
T  38247432 cacaaaacttatgccagtagataagttcaaataacccaatccaaa 38247476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 51695551 - 51695503
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  |||| ||||||||||||| ||||| ||||||||||    
T  51695551 ataagctatcttggagaatttatgaaaataagctgaaaatagcttatga 51695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12497047 - 12496991
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaata 222  Q
    |||| |||||||||||||||||||| | || |||||||||||||| |||||||||||    
T  12497047 caaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaata 12496991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 9130294 - 9130240
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||||| |||| ||||||||||||| | ||||||||    
T  9130294 caaatagtctcacaaaacttatgccagtagataagctcaaataagctaatccaaa 9130240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 36963329 - 36963275
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||||| |||| | ||||||||||| ||||||||||    
T  36963329 caaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaa 36963275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 43717926 - 43717853
Alignment:
Q  150 gttttcataagttttgc-aaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaata 222  Q
    ||||||||||||| | | ||| |||||||||||||||||| |  ||| ||||||||||||| ||||||||||||    
T  43717926 gttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaata 43717853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 26473808 - 26473762
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttat 146  Q
    |||||||||| || ||| |||||||||||||||| ||||||||||||    
T  26473808 ataagctatcctagagagcttatgaaaataagttaaaactagcttat 26473762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 30251429 - 30251375
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||| ||||||||| | |||| ||||||||||||| ||||||||||    
T  30251429 caaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaa 30251375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 6950430 - 6950369
Alignment:
Q  250 ttgtgagattatttcggagaggttat-taaacaacttatgacatgtctataagctgttttca 310  Q
    |||||||||| ||| |||||| |||| |||||||| ||||||||||| ||||| ||||||||    
T  6950430 ttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttca 6950369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 7878468 - 7878549
Alignment:
Q  229 tttatctacttatataagtacttgtgagattatttcggagaggttattaaacaacttatgacatgtctataagctgttttca 310  Q
    |||||||||||  ||||| |||  ||||| | ||| |||||| ||||  |||| |||||||||||||||||| |||||||||    
T  7878468 tttatctacttgcataagaactaatgagactgtttgggagagcttatagaacagcttatgacatgtctataaactgttttca 7878549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 11183625 - 11183592
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||| ||||||||||||||||||||    
T  11183625 aaacaacttatgatatgtctataagctgttttca 11183592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 32131307 - 32131344
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  32131307 ataatctatcttgtagaacttatgaaaataagttgaaa 32131344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 35749626 - 35749589
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  35749626 ataagctatcttaaagaacttatgaaaatatgttgaaa 35749589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 26771343 - 26771403
Alignment:
Q  150 gttttcataagttttgc-aaagagtctcacaaaacttatgccggtagttaagctcaaataa 209  Q
    ||||||||||||| | | ||| |||||||||||||||||||| |||| |||||||| ||||    
T  26771343 gttttcataagttctcccaaacagtctcacaaaacttatgcccgtagataagctcagataa 26771403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 27028845 - 27028893
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||  ||| |||||||||||||| ||||| ||||||||||    
T  27028845 ataagctatcttggagagcttatgaaaataagctgaaaatagcttatga 27028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 42597512 - 42597484
Alignment:
Q  283 cttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||||||||||||||||    
T  42597512 cttatgacatgtctataagctgttttcaa 42597484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 43709338 - 43709302
Alignment:
Q  281 aacttatgacatgtctataagctgttttcaaaagctc 317  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  43709338 aacttatgacatgtctataagctattttcataagctc 43709302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 20368236 - 20368188
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  20368236 ataagctttcttggagaacttatgaaaataagttgaaactagcttatga 20368188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 1669788 - 1669821
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||||||    
T  1669788 aaacaacttatgacatgtctataagctgttttca 1669821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 3155253 - 3155222
Alignment:
Q  279 acaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||||    
T  3155253 acaacttatgacatgtctataagctgttttca 3155222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 2460105 - 2460175
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||| | |||  ||||| ||||  |||||||||||||||||||| |||| |||||||||    
T  2460105 ataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaa 2460175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 9667975 - 9668009
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttcaa 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaa 9668009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 281802 - 281871
Alignment:
Q  242 ataagtacttgtgagattatttcggagaggttattaaa-caacttatgacatgtctataagctgttttca 310  Q
    |||||||||||||||| | ||| |||||| | ||  || |||||||||||||||||||||| ||||||||    
T  281802 ataagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttca 281871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 1019570 - 1019631
Alignment:
Q  247 tacttgtgagattatttcggagaggttattaaacaacttatgacatgtctataagctgtttt 308  Q
    ||||||||||||||||| |||| | ||   ||||||||||| ||||||||||||| ||||||    
T  1019570 tacttgtgagattatttgggagggttttggaaacaacttataacatgtctataagttgtttt 1019631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4163261 - 4163302
Alignment:
Q  179 aaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||| |||| ||||||||||||| ||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagccaatccaaa 4163302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4224882 - 4224923
Alignment:
Q  179 aaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||| |||| ||||||||||||| ||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagccaatccaaa 4224923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 6647401 - 6647438
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  6647401 ataagctatcttagagagcttatgaaaataagttgaaa 6647438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 35070624 - 35070575
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||| |||| |||| |||| ||||||||||||| ||||||||||    
T  35070624 agtctcacaagacttgtgccagtaggtaagctcaaataagccaatccaaa 35070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 10016736 - 10016772
Alignment:
Q  184 ttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  10016736 ttatgcctgtagataagctcaaataaaccaatccaaa 10016772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 20377910 - 20377942
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttc 309  Q
    ||||||||||||||||||||||||| |||||||    
T  20377910 aaacaacttatgacatgtctataagttgttttc 20377942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 12234879 - 12234912
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttca 12234912  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 19214463 - 19214414
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    |||||||||| || |||||||||||||||||||||||||| || ||||||    
T  19214463 tataagctatattgtagaacttatgaaaataagttgaaacaagtttatga 19214414  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 28521002 - 28521035
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||||||||||||||||||    
T  28521002 aaacaacttatgacatgtctataagctgttttca 28521035  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 33601402 - 33601342
Alignment:
Q  150 gttttcataagtttt-gcaaagagtctcacaaaacttatgccggtagttaagctcaaataa 209  Q
    ||||||||||||| | | ||||||||||||||||||||||||  ||| |||||||||||||    
T  33601402 gttttcataagttctcgaaaagagtctcacaaaacttatgccaatagataagctcaaataa 33601342  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 33602019 - 33601963
Alignment:
Q  150 gttttcataagtttt-gcaaagagtctcacaaaacttatgccggtagttaagctcaa 205  Q
    ||||||||||||||| | ||||||||||| |||||||||||| |||| |||||||||    
T  33602019 gttttcataagttttcgaaaagagtctcataaaacttatgccagtagataagctcaa 33601963  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 18765379 - 18765434
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaat 221  Q
    |||| |||||||||||||||||| |  ||| |||||||||||||| ||||||||||    
T  18765379 caaacagtctcacaaaacttatgtcaatagataagctcaaataaagcaatccaaat 18765434  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 29290413 - 29290379
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttcaa 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  29290413 aaacaacttatgacatgtccataagctgttttcaa 29290379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 33266461 - 33266407
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||  |||||||||    
T  33266461 caaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaa 33266407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 39907896 - 39907950
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| ||||||||||||||||| || |||  ||||||||||| ||||||||||||    
T  39907896 caaacagtctcacaaaacttatccctgtatataagctcaaatgaaccaatccaaa 39907950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 39539771 - 39539804
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  39539771 aaacaacttatgacatgtccataagctgttttca 39539804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 40530465 - 40530428
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    |||||||||| || ||||||||||||||||||||||||    
T  40530465 ataagctatcctaaagaacttatgaaaataagttgaaa 40530428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 40598555 - 40598596
Alignment:
Q  92 tataagctataagctatcttatagaacttatgaaaataagtt 133  Q
    ||||||||||||||||| ||  ||||||||||||||||||||    
T  40598555 tataagctataagctattttgaagaacttatgaaaataagtt 40598596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 27863717 - 27863657
Alignment:
Q  150 gttttcataagttttg-caaagagtctcacaaaacttatgccggtagttaagctcaaataa 209  Q
    ||||||||||||| |  |||| |||||||||||||||||||| || | |||||||||||||    
T  27863717 gttttcataagttctctcaaatagtctcacaaaacttatgccagtggataagctcaaataa 27863657  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 39967934 - 39967982
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||| | |||||| |||||||||||||||||  |||||||||    
T  39967934 ataagctatctgagagaactaatgaaaataagttgaaaacagcttatga 39967982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 15757628 - 15757579
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||||||||| |||  ||||||||||||||||| ||||||    
T  15757628 agtctcacaaaacttatgccagtaaataagctcaaataaaccattccaaa 15757579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 9174829 - 9174877
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatga 148  Q
    ||||||||||||| ||| |||||||||||||| ||||| ||||||||||    
T  9174829 ataagctatcttacagagcttatgaaaataagctgaaaatagcttatga 9174877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 27317457 - 27317528
Alignment:
Q  150 gttttcataagttttg-caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    ||||||||||||| |  |||| ||||||| |||||||||| |||||| |||||||||||||  |||||||||    
T  27317457 gttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaa 27317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 4607020 - 4607074
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||   ||||| ||||||||||||| ||||||||||    
T  4607020 caaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaa 4607074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 14316106 - 14316168
Alignment:
Q  249 cttgtgagattatttcggagaggttatt-aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||| ||||| |||||| ||||  |||||||||||||||| | |||||||||||||||    
T  14316106 cttgtgagactattttggagagcttatggaaacaacttatgacatatgtataagctgttttca 14316168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 20926516 - 20926554
Alignment:
Q  99 tataagctatcttatagaacttatgaaaataagttgaaa 137  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  20926516 tataagctatattagagaacttatgaaaataagttgaaa 20926554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 34652026 - 34652060
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttcaa 311  Q
    ||||||||||||||||||| |||||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaa 34652060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 42659186 - 42659132
Alignment:
Q  166 caaagagtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||| |||||||||||||||||||| |||  ||||||||||||| |||| |||||    
T  42659186 caaacagtctcacaaaacttatgccagtaaataagctcaaataagccaacccaaa 42659132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 1939323 - 1939356
Alignment:
Q  278 aacaacttatgacatgtctataagctgttttcaa 311  Q
    |||||||||||||||||| |||||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaa 1939356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 3312177 - 3312226
Alignment:
Q  171 agtctcacaaaacttatgccggtagttaagctcaaataaaccaatccaaa 220  Q
    |||||||||||||||| | | |||| ||||||||||||| ||||||||||    
T  3312177 agtctcacaaaacttacgtcagtagataagctcaaataagccaatccaaa 3312226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 18066142 - 18066191
Alignment:
Q  100 ataagctatcttatagaacttatgaaaataagttgaaactagcttatgag 149  Q
    ||||||||||||  |||||||| ||||||||| ||||| |||||||||||    
T  18066142 ataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgag 18066191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 310
Target Start/End: Complemental strand, 32821889 - 32821856
Alignment:
Q  277 aaacaacttatgacatgtctataagctgttttca 310  Q
    ||||||||||||||||||| ||||||||||||||    
T  32821889 aaacaacttatgacatgtccataagctgttttca 32821856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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