View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_6 (Length: 428)
Name: NF0642_low_6
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 38823371 - 38823541
Alignment:
| Q |
16 |
atgtgaagaaaacctacaagttcaagttgattgagacataaggcaaaacaactcacaattcagaaatacattatacaatacacaaaatcactaaaacact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823371 |
atgtgaagaaaacctacaagttcaagttgattgagacataaggcaaaacaactcacaattcagaaatacattatacaatacacaaaatcactaaaacact |
38823470 |
T |
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| Q |
116 |
aaacaaaggacagagtgtaatttatgacagactgaacaaaaagcttgtactcgagatgttgagtgcaaaca |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823471 |
aaacaaaggacagagtgtaatttatgacagactgaacaaaaagcttgtactcgagatgttgagtgcaaaca |
38823541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 38823537 - 38823644
Alignment:
| Q |
240 |
aaacacaacaacataagaaaatacaccgattcaaaccttttatagtcagaacttgaactctacacttgtgctttgctaagtctaaagtattctcggtgta |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38823537 |
aaacacaacaacataagaaaatacaccgattcaaaccttttatagtcagaacttgaactctacacttgtgctttgctaagtctaaagtattctcggtgta |
38823636 |
T |
|
| Q |
340 |
cttaaaat |
347 |
Q |
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|||||||| |
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| T |
38823637 |
cttaaaat |
38823644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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