View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0642_low_8 (Length: 399)
Name: NF0642_low_8
Description: NF0642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0642_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 39253896 - 39254258
Alignment:
| Q |
29 |
aagtccttcctaaacaaacatcattctctccttgcacccaaatccttcgccacaaaaatcgccacacactaccctatgcaattacccttctccccatcct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39253896 |
aagtccttcctaaacaaacatcattctctccttgcacccaaatccttcgccacaaaaatcgccacacactaccctatgcaattacccttctccccatcct |
39253995 |
T |
|
| Q |
129 |
tctccatactaaaattagaaaaattcaaaatgtaagaaacttcaataggaggctatttaagtcattctacaatccaaccgtacattaccacgtaactgta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39253996 |
tctccatactaaaattagaaaaattcaaaatgtaagaaacttcaataggaggctatttaagtcattctacaatccaaccgtacattaccacgtaactgta |
39254095 |
T |
|
| Q |
229 |
cgtcaaacctgttcttaaacatcaacacttgaaactgacaagaacattcgtgctttgttgtcttcacgtcataaaaccaaaataacaaatcatggttcct |
328 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39254096 |
cgtcaaacctgttcttaaaaatcaacacttgaaactgacaagaacattcgtgctttgttgtcttcacgtcataaaaccaaaataacaaatcatggttcct |
39254195 |
T |
|
| Q |
329 |
aaattttcttattatataaacttgtttttgtttcctaaatttctcatcaaactgattcatctc |
391 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39254196 |
aaattttcttattatataaacttgtttttgtttcctaaatttctcatcaaactgattcatctc |
39254258 |
T |
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