View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0643_high_11 (Length: 313)
Name: NF0643_high_11
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 9524225 - 9523949
Alignment:
| Q |
1 |
gttgcaagaagttcttctctgcttctcccaacagcatgagacatgtcctagtaaataagaacaattaggcatttaaaagaactttatatgaacaaatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9524225 |
gttgcaagaagttcttctctgcttctcccaacagcatgagacatgtcctagtaaataagaacaattag-catttaaaagaactttatatgaacaaatatg |
9524127 |
T |
|
| Q |
101 |
ataagaagcactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttcaagtaaaacttcctgtagtgttccatgcatgcc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9524126 |
ataagaagtactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagagttcaagtaaaacttcatgtagtgttccatgcatgcc |
9524027 |
T |
|
| Q |
201 |
tctttgttcttagttccaacatgctcagcaacttctgcccaattttccaggccatacatttcaattccctaaaaccaa |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9524026 |
tctttgttcttagttccaacatgctcagcaacttctgcccaattttctaggccatacatttcaattccctaaaaccaa |
9523949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 9496657 - 9496391
Alignment:
| Q |
11 |
gttcttctctgcttctcccaacagcatgagacatgtcctagtaaataagaacaattaggcatttaaaagaactttatatgaacaaatatgataagaagca |
110 |
Q |
| |
|
||||||||||| || |||||||| |||| |||||||||||||||||||||| | || ||||||||| | |||||||| ||| |||||||||||||||| |
|
|
| T |
9496657 |
gttcttctctgtttttcccaacaacatgcgacatgtcctagtaaataagaatggtgag-catttaaaatatctttatataaacgaatatgataagaagca |
9496559 |
T |
|
| Q |
111 |
ctaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttcaagtaaaacttcctgtagtgttccatgcatgcctctttgttct |
210 |
Q |
| |
|
|| |||| |||||||||| |||||| |||||||||||||||||| || || || ||||| | ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
9496558 |
ctgattgcagcttcattcaaagcctgatataccggaagagggaagaacggggagtttaagtacacattcctatagtgttctatgcatgcttctttgttct |
9496459 |
T |
|
| Q |
211 |
tagttccaacatgctcagcaacttctgcccaattttccaggccatacatttcaattccctaaaaccaa |
278 |
Q |
| |
|
| |||||||| |||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
9496458 |
ttgttccaacgtgctcagcaacttctgcccagtttcccatgccatacatttctattccctaaaaccaa |
9496391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 23045152 - 23045425
Alignment:
| Q |
4 |
gcaagaagttcttctctgcttctcccaacagcatgagacatgtcctagtaaataagaacaattaggcatttaaaagaactttatatgaacaaatatgata |
103 |
Q |
| |
|
|||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||| ||||| |||||||| | |||| |||||| ||||||||| |
|
|
| T |
23045152 |
gcaagaagttcttccctactttttccaacaacatgagacatgtcctagtaaataagaacgattagt-atttaaaatacatttaaatgaacgaatatgata |
23045250 |
T |
|
| Q |
104 |
agaagcactaattgaagcttcattcgaagcctatcataccggaagagggaagactggagacttcaagtaaaacttcctgtagtgttccatgcatgcctct |
203 |
Q |
| |
|
|||| ||| ||| ||| ||||| ||||| | ||||||||||||||||||| ||||| | |||||| | |||| |||||||| ||||||||||| |
|
|
| T |
23045251 |
agaaacaccgatttcagcgtcatttgaagcatctcataccggaagagggaagcacggagagtccaagtacacaatcctatagtgttcagtgcatgcctct |
23045350 |
T |
|
| Q |
204 |
ttgttcttagttccaacatgctcagcaacttctgcccaattttccaggccatacatttcaattccctaaaaccaa |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || | || |||||||||||||| ||||||||||||| |
|
|
| T |
23045351 |
ttgttctttgttccaacatgctcagcaacttctgcccagttattcatgccatacatttcaagtccctaaaaccaa |
23045425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1198 times since January 2019
Visitors: 4113