View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_high_14 (Length: 259)
Name: NF0643_high_14
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 7117673 - 7117890
Alignment:
| Q |
35 |
tatgtgttttaaagctataaattctaattttaagtagaatcaattatactcgacagtaaccaaatatgtcaagttgattaagcacaattaaacctaattc |
134 |
Q |
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| T |
7117673 |
tatgtgttttaaaactataaattctaattttaaatagaatcaattatactcgacagtaactaaacatgtcaagtcgattaagcacaattaaacctaatcc |
7117772 |
T |
|
| Q |
135 |
cgttggatatattaatatacaaacaagttaaatac-tactactagcttacttacacaaacaaattagtgttactgtgaaatttttggtggattaatacat |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
7117773 |
tgttggatatattaatatacaaacaagttaaatacttactactagcttacttacacaaacaaattaatgttagtgtgaaacttttggtggattaatacat |
7117872 |
T |
|
| Q |
234 |
catttgatcattcttttc |
251 |
Q |
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|||||||||||||||||| |
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| T |
7117873 |
catttgatcattcttttc |
7117890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 1048749 - 1048716
Alignment:
| Q |
45 |
aaagctataaattctaattttaagtagaatcaat |
78 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
1048749 |
aaagctataaattctaactttaagtagaatcaat |
1048716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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