View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_high_3 (Length: 582)
Name: NF0643_high_3
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 53 - 579
Target Start/End: Complemental strand, 9524717 - 9524198
Alignment:
| Q |
53 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaagcacggccttca |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |
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| T |
9524717 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcgggttataaccactggcttcaaccaaagtacgaccttca |
9524618 |
T |
|
| Q |
153 |
tttcttgaggaatttggcttatttcctccaaaatctccgtcctttggataatctgtcaatgacaaaaggactagggatgaatacagaatgtaatgtaatg |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9524617 |
tttcttgaggaatttggcttatttcctccaaaatctccgtcctttggataatctgtcaaagacaaaaggactagggatgaatacagaatgtaatgtaatg |
9524518 |
T |
|
| Q |
253 |
tcaattgggatttacgggcaaatataaaatgcacaccttccagcaaactagcttttccccgacctttattggatgcctttttgttagcaccagctgcagc |
352 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9524517 |
tcaattgggatttacgagcaaatataaaatgcacaccttcccgcaaactagcttttccccgacctttattggatgcctttttgttagcaccagctgcagc |
9524418 |
T |
|
| Q |
353 |
atgtgtgttgactgagggcccagaatccgaccctaaaatataaaaacaatagagatcgaaagaaaatgataattagcaaattgttgaatgcgtcataata |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9524417 |
atgtgtgttgactgagggcccagaatccgaccctaaaatatataaacaatagagatcgaaagaaaacgataattagcaaattgttgaatgcgtcataata |
9524318 |
T |
|
| Q |
453 |
gtatactgtgtaactgaaatcatttttcaataaaactaaaaactacataaactaagtactaacgaatgtgatgtcgtgtattgtgataaacctttcgccg |
552 |
Q |
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| T |
9524317 |
gtatactgtgtaactgaaatcatttttcaataaaactaaaaactacataaa-------ctaacgaatgtgatgtcgtgtattgtgataaacctttcgccg |
9524225 |
T |
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| Q |
553 |
ttgcaagaagttcttctctgctcctcc |
579 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
9524224 |
ttgcaagaagttcttctctgcttctcc |
9524198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 60 - 245
Target Start/End: Complemental strand, 9497699 - 9497514
Alignment:
| Q |
60 |
gcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaagcacggccttcatttcttg |
159 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | | ||||||||||||||| |
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| T |
9497699 |
gcgagtaattgctcagcatcattatcatattcaggatcgaattcctgtcttttcgggttataaccactgacttcaaccaaggaagggccttcatttcttg |
9497600 |
T |
|
| Q |
160 |
aggaatttggcttatttcctccaaaatctccgtcctttggataatctgtcaatgacaaaaggactagggatgaatacagaatgtaa |
245 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
9497599 |
aggaatttggcttatttcctccaaaatctctgtccattggagaatctgtcaatgacaaaagaactaggattaaatacagaatgtaa |
9497514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 403
Target Start/End: Complemental strand, 9497406 - 9497307
Alignment:
| Q |
304 |
cttttccccgacctttattggatgcctttttgttagcaccagctgcagcatgtgtgttgactgagggcccagaatccgaccctaaaatataaaaacaata |
403 |
Q |
| |
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|||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| || |||||||| |
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| T |
9497406 |
ctttcccccgccctttattggatgccttttggttagcactagctgcagcatgtgtgttgactgagggccctgaatccgaccctacaatttataaacaata |
9497307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 9497473 - 9497428
Alignment:
| Q |
249 |
aatgtcaattgggatttacgggcaaatataaaatgcacaccttcca |
294 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
9497473 |
aatgtcaattgggatttatgaccaaatataaaatgcacaccttcca |
9497428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 53 - 182
Target Start/End: Original strand, 23044519 - 23044648
Alignment:
| Q |
53 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaagcacggccttca |
152 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| ||| ||| ||||| || |||||| ||||||||||||||||||||||||||| | ||| || |
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| T |
23044519 |
catatcggcgagtaatttctcagcatcattatcatactcaatatcaaattcctgccttttcgggttataaccactggcttcaaccaaagaagggctgtcg |
23044618 |
T |
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| Q |
153 |
tttcttgaggaatttggcttatttcctcca |
182 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
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|
| T |
23044619 |
tttcttgaggattttggcttatttcctcca |
23044648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 23044813 - 23044917
Alignment:
| Q |
322 |
tggatgcctttttgttagcaccagctgcagcatgtgtgttgactgagggcccagaatccgaccctaaaatataaaaacaatagagatcgaaagaaaatga |
421 |
Q |
| |
|
|||| ||||||| ||||| | |||||||||||||| || |||||| ||||||||||||| |||| || ||| |||| || || |||||||||||| || |
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| T |
23044813 |
tggacgccttttggttagtcctagctgcagcatgtgccttcactgagagcccagaatccgatcctacaacatataaacgatggatatcgaaagaaaagga |
23044912 |
T |
|
| Q |
422 |
taatt |
426 |
Q |
| |
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||||| |
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|
| T |
23044913 |
taatt |
23044917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 23044752 - 23044797
Alignment:
| Q |
246 |
tgtaatgtcaattgggatttacgggcaaatataaaatgcacacctt |
291 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
23044752 |
tgtaatgtcaattgggatttaggatcaaatattaaatgcacacctt |
23044797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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