View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_high_5 (Length: 508)
Name: NF0643_high_5
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 93 - 508
Target Start/End: Original strand, 3782978 - 3783387
Alignment:
| Q |
93 |
tccaatcttataattccttcacattccgaaaatgctccctcttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaa |
192 |
Q |
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| T |
3782978 |
tccaatcttataattccttcacattccgaaaatgttcccccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttagcaa |
3783077 |
T |
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| Q |
193 |
acttcaacctccttatttcagattcttcacaagatgttaaaaatttgcacccnnnnnnnnnctttccgaacttgccttctcctcatactgaacacaatga |
292 |
Q |
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| T |
3783078 |
acttcaacctccttatttcagattcttcacaagatgttaaaaatttgcaccctttt------tttccgaacttgccttctcctcatactgaacacaatga |
3783171 |
T |
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| Q |
293 |
cacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaa |
392 |
Q |
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| T |
3783172 |
cacacgcgtcgtccctctaatggccattcaagtcaccattctacctaactctggattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaa |
3783271 |
T |
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| Q |
393 |
tcacttcaccaattcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttc |
492 |
Q |
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| T |
3783272 |
tcacttcaccaattcatgaaactctggtcatatgtttccaaaaccaaaaccatcaacaacagattatctctagaacactctctgcctcttgatcttcttc |
3783371 |
T |
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| Q |
493 |
cttcacatgaaagaga |
508 |
Q |
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| T |
3783372 |
cttcacatgaaagaga |
3783387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 508
Target Start/End: Original strand, 37915076 - 37915275
Alignment:
| Q |
306 |
cctctaatggccattcaagtcaccattctacctaactctagattcgctatctgcctcacgtttaaccacattgcaggtgatggaaaatcacttcaccaat |
405 |
Q |
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| T |
37915076 |
cctctcatggccattcaaatcaccattctacctaactctggcttctctatatgtctcgcgtttaaacacgttgttgcagacggaaaatcacttcatcatt |
37915175 |
T |
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| Q |
406 |
tcatgaaattctggtcttatgtttccaaaaccaaaaccatcaacaacagtttatctctagaacactctctgcctcttgatcttcttccttcacatgaaag |
505 |
Q |
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| T |
37915176 |
tcatgaaattttgggcatttgtttccaaagctataacaaacaacaacgagttgtctcttgaatactctccgcctcttga---tcttccttcccatgaaag |
37915272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 37961319 - 37961253
Alignment:
| Q |
133 |
cttatatacgctacctcaatggagactttctctccttcaccgttgctgaatccttagcaaacttcaa |
199 |
Q |
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|||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||| |||| ||||||| |
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| T |
37961319 |
cttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
37961253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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