View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0643_low_1 (Length: 867)
Name: NF0643_low_1
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 10178345 - 10177776
Alignment:
| Q |
1 |
ttgaaaaaggaatctaaaatttgatctcaatgatcagtttcaattcctgtcaattgtcatgcttatatgttgttggatttgctactagttgctaacatgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10178345 |
ttgaaaaaggaatctaaaatttgatctcaatgatcaatttcaattcctgtcaattgtcatgcttatatgttgttggatttgctactagttgctaacatgg |
10178246 |
T |
|
| Q |
101 |
acttcagaaaatcataataaagttggatgaacaagaacaactactactatataga--tttgtaattatgttgacaatttctctccatttgaatatttgaa |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10178245 |
acttcagaaaatcataataaagttggatgaacaa-aagaacaactactatatagaaatttgtaattatgttgacaatttctctccatttgaatatttgaa |
10178147 |
T |
|
| Q |
199 |
cagaatttgtgaactacaaaggatgcttaatcaaataagcagaaatatatacttcaatgaaagagaacatttgatccatgtaaaagctattacaaaccgt |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10178146 |
cagaatttgtgaactacaaaggatgcttaatcaaataagcagaaatatat-cagcaatgaaagagaacatttgatccatgtaaaagctattacgaaccgt |
10178048 |
T |
|
| Q |
299 |
gaaggactaactctcttaaaacttgaaacagttaggtcaaggtcatgctagtaaaagattataacgggcttctagagaactattgaaattgagctgaact |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10178047 |
gaaggactaactctcttaaaacttgaaacagttaggtcaaggtcatgctagtaaaagattataacgggcttctagagaactattgaaattgagctgaact |
10177948 |
T |
|
| Q |
399 |
gaacattgcttcatttaatatataggcttcataattcatgatctgccctcaaaattagatacatttcctccatatttacacc-aacaaacaatacaaaca |
497 |
Q |
| |
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|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10177947 |
gaacattgct------------------tcataattcatgatctgcacacaaaattagatacatttcctccatatttacaccaaacaaacaatacaaaca |
10177866 |
T |
|
| Q |
498 |
tttttaacatgtaaagcgtgagactataagatcctgtttggataaatagcttaattaacacttattagtgtttatacataaacttgtttt |
587 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10177865 |
ttttaaacatgtaaagcgtgagactataagacgttgtttggataaatagcttaattaacacttattagtgtttatacataaacttgtttt |
10177776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 10283420 - 10283500
Alignment:
| Q |
264 |
aacatttgatccatgtaaaagctattacaaaccgtgaaggactaactctcttaaaacttgaaacagttaggtcaaggtcatg |
345 |
Q |
| |
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||||||| |||||||||||| ||||| ||||| ||||||||||||| || ||||| |||||||||||| || ||||||||| |
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| T |
10283420 |
aacatttcatccatgtaaaaa-tattagaaaccatgaaggactaactatcctaaaagttgaaacagttatgtaaaggtcatg |
10283500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 10281642 - 10281705
Alignment:
| Q |
112 |
tcataataaagttggatgaacaagaacaactactactatatagatttgtaattatgttgacaat |
175 |
Q |
| |
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|||||| ||||||||||| | |||||||||||||||||| | ||| |||||||||||||||| |
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| T |
10281642 |
tcataacaaagttggatggatgagaacaactactactatagaaattcataattatgttgacaat |
10281705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 586 - 827
Target Start/End: Complemental strand, 18732008 - 18731766
Alignment:
| Q |
586 |
tttattaaggaaatacattaagctatccaaagtcaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaa-tcacaacatcattgtt |
684 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18732008 |
tttattaaggaaatacattaagctgtccaaagtaaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaaatcacaacatcattgtt |
18731909 |
T |
|
| Q |
685 |
gttgtttactttctgtcctatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaa |
784 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18731908 |
gttgtttactttctgtcttatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaa |
18731809 |
T |
|
| Q |
785 |
ggctgccatatcaatgaaataatcaagttattcttcaaccttt |
827 |
Q |
| |
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|| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
18731808 |
ggttgcaatatcaatgaaataatcaagttattcttcaaccttt |
18731766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 588 - 827
Target Start/End: Complemental strand, 32322563 - 32322323
Alignment:
| Q |
588 |
tattaaggaaatacattaagctatccaaagtcaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaa-tcacaacatcattgttgt |
686 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32322563 |
tattaaggaaatacattaagctgtccaaagtcaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaaatcacaacatcattgttgt |
32322464 |
T |
|
| Q |
687 |
tgtttactttctgtcctatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaagg |
786 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32322463 |
tgtttactttctgtcttatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaagg |
32322364 |
T |
|
| Q |
787 |
ctgccatatcaatgaaataatcaagttattcttcaaccttt |
827 |
Q |
| |
|
|||| ||||||||||||||| ||| | |||||||||||||| |
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|
| T |
32322363 |
ctgcaatatcaatgaaataagcaattcattcttcaaccttt |
32322323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 588 - 827
Target Start/End: Complemental strand, 32326974 - 32326734
Alignment:
| Q |
588 |
tattaaggaaatacattaagctatccaaagtcaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaa-tcacaacatcattgttgt |
686 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32326974 |
tattaaggaaatacattaagctgtccaaagtcaacttaaagctgtcatatatcagaaaattgaatcatgacagttgacaaaatcacaacatcattgttgt |
32326875 |
T |
|
| Q |
687 |
tgtttactttctgtcctatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaagg |
786 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326874 |
tgtttactttctgtcttatttagcaaatatgccttcattgtaaattattgtacatttaatttcattcattgttatgtctataccttcagctatttaaagg |
32326775 |
T |
|
| Q |
787 |
ctgccatatcaatgaaataatcaagttattcttcaaccttt |
827 |
Q |
| |
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|||| ||||||||||||||| ||| | |||||||||||||| |
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|
| T |
32326774 |
ctgcaatatcaatgaaataagcaattcattcttcaaccttt |
32326734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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