View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0643_low_10 (Length: 439)
Name: NF0643_low_10
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 33 - 428
Target Start/End: Original strand, 17339086 - 17339473
Alignment:
| Q |
33 |
ataaaggaatgattgcaatttcattgatagatctcataatgggggtacaatatcttaaatagcaaaagtattctacgatctttttggatcaaccaaatcc |
132 |
Q |
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| T |
17339086 |
ataaaggaatgattgcaatttcattgatagatctcataatgggggtacaatatcttaaatagcaaaagtattctacgatctttttggatcaaccaaatcc |
17339185 |
T |
|
| Q |
133 |
ttaccgacaaaatcaaaataaactaacgagtatcctcataagcttaactcaggtagtataaacaatgcataatatagacaaggtatggagtgaaccccaa |
232 |
Q |
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|||||||||||||||||| ||| ||||||| |||||||||||||| | |||| |||||| ||||||||| |||||| | | ||||| || | |
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| T |
17339186 |
ttaccgacaaaatcaaaa--------cgaatatcctcgtaagcttaactcagttggtatgaacaatacataatataagcaaggtcttgggtgaaatccga |
17339277 |
T |
|
| Q |
233 |
ccaccactaaagaaacaaattaatgagtcatcaatcttattgaattaatgagttattactacttaatggtagtacggtcattccaccatctctgattgag |
332 |
Q |
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| T |
17339278 |
ccaccgctaaagaaacaaactaatgagtcatcaatcttattgaattaatgagttattattacttaatggtagtacggtcattccaccgcctctgtttgag |
17339377 |
T |
|
| Q |
333 |
agtattgctctttaaacttctgaaattgatctcacacatccaaaattagcttcaatacctccaagattagtttactgtctttcactctttaatatt |
428 |
Q |
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|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
17339378 |
agtattgctctttaaacttctgaaattgctctcacgcacccaaaattagcttcaatacctccatcattagtttactgtcattcactctttaatatt |
17339473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 29335633 - 29335598
Alignment:
| Q |
173 |
agcttaactcaggtagtataaacaatgcataatata |
208 |
Q |
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| T |
29335633 |
agcttaactcagttagtataaacaatgcataatata |
29335598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 34481480 - 34481437
Alignment:
| Q |
165 |
tcctcataagcttaactcaggtagtataaacaatgcataatata |
208 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
34481480 |
tcctcataagcttaactcagttagtatgaacaatgcattatata |
34481437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 3847603 - 3847651
Alignment:
| Q |
168 |
tcataagcttaactcaggtagtataaacaatgcataatatagacaaggt |
216 |
Q |
| |
|
||||||||||||||||| ||| | ||| ||||||||||||| ||||||| |
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|
| T |
3847603 |
tcataagcttaactcagttagaaaaaataatgcataatatatacaaggt |
3847651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 47643999 - 47643958
Alignment:
| Q |
165 |
tcctcataagcttaactcaggtagtataaacaatgcataata |
206 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
47643999 |
tcctcgtaagcttaactcagttagtatagacaatgcataata |
47643958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 34960216 - 34960180
Alignment:
| Q |
172 |
aagcttaactcaggtagtataaacaatgcataatata |
208 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |
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|
| T |
34960216 |
aagcttaactcagttggtataaacaatgcataatata |
34960180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 8727769 - 8727729
Alignment:
| Q |
168 |
tcataagcttaactcaggtagtataaacaatgcataatata |
208 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||| |
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|
| T |
8727769 |
tcataagcttagctcagttagtagaaacaatgcataatata |
8727729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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