View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0643_low_14 (Length: 379)

Name: NF0643_low_14
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0643_low_14
NF0643_low_14
[»] scaffold0060 (1 HSPs)
scaffold0060 (125-207)||(11633-11718)
[»] chr5 (8 HSPs)
chr5 (294-371)||(11832890-11832962)
chr5 (28-57)||(857854-857883)
chr5 (29-57)||(4737002-4737030)
chr5 (29-57)||(17421639-17421667)
chr5 (171-207)||(21633054-21633090)
chr5 (171-207)||(21641301-21641337)
chr5 (29-57)||(38661337-38661365)
chr5 (29-57)||(40234283-40234311)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-57)||(452315-452343)
[»] chr8 (2 HSPs)
chr8 (29-57)||(34103209-34103237)
chr8 (29-57)||(42556543-42556571)
[»] chr7 (10 HSPs)
chr7 (29-57)||(938856-938884)
chr7 (29-57)||(8047919-8047947)
chr7 (29-57)||(15230287-15230315)
chr7 (29-57)||(22479429-22479457)
chr7 (29-57)||(24720484-24720512)
chr7 (29-57)||(26380021-26380049)
chr7 (29-57)||(27168460-27168488)
chr7 (29-57)||(27812165-27812193)
chr7 (29-57)||(37138881-37138909)
chr7 (29-57)||(48454754-48454782)
[»] chr6 (2 HSPs)
chr6 (29-57)||(25061618-25061646)
chr6 (29-57)||(33730478-33730506)
[»] chr4 (5 HSPs)
chr4 (29-57)||(6137720-6137748)
chr4 (29-57)||(13621340-13621368)
chr4 (29-57)||(34682995-34683023)
chr4 (29-57)||(41172652-41172680)
chr4 (29-57)||(48560240-48560268)
[»] chr3 (4 HSPs)
chr3 (29-57)||(3800146-3800174)
chr3 (29-57)||(27359947-27359975)
chr3 (29-57)||(45293170-45293198)
chr3 (29-57)||(47461912-47461940)
[»] chr2 (4 HSPs)
chr2 (29-57)||(16513034-16513062)
chr2 (29-57)||(23175351-23175379)
chr2 (29-57)||(23586608-23586636)
chr2 (29-57)||(34082773-34082801)
[»] chr1 (3 HSPs)
chr1 (29-57)||(13385946-13385974)
chr1 (29-57)||(16005524-16005552)
chr1 (29-57)||(50559457-50559485)


Alignment Details
Target: scaffold0060 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 11718 - 11633
Alignment:
Q  125 gtcctccatattttacctttcgtcttcccatg---tctcttccgtcaatcacgttttctcatcaccatccataacatccctccact 207  Q
    ||||||||||||| ||||||||||||||| ||   |||||||| |||  || ||||||||||||||||||||||| ||||||||||    
T  11718 gtcctccatatttcacctttcgtcttcccttggtgtctcttccatcatacatgttttctcatcaccatccataacctccctccact 11633  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 11832890 - 11832962
Alignment:
Q  294 catggttttgtgctcaatcattggtttggttatgatcgttatcttgaatttgtgcttgaaaattttgaacttcatctc 371  Q
    ||||||||||| ||||||||||| ||     ||||| ||||||||||||||| ||||||||| ||||| |||||||||    
T  11832890 catggttttgttctcaatcattgttt-----atgatggttatcttgaatttgcgcttgaaaaatttgatcttcatctc 11832962  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 857883 - 857854
Alignment:
Q  28 caaactagtgggtgtgttctagcaaatccc 57  Q
    ||||||||||||||||||||||||||||||    
T  857883 caaactagtgggtgtgttctagcaaatccc 857854  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 4737002 - 4737030
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  4737002 aaactagtgggtgtgttctagcaaatccc 4737030  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 17421667 - 17421639
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  17421667 aaactagtgggtgtgttctagcaaatccc 17421639  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 21633090 - 21633054
Alignment:
Q  171 cacgttttctcatcaccatccataacatccctccact 207  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  21633090 cacgttttttcatcaccatccataacctccctccact 21633054  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 21641337 - 21641301
Alignment:
Q  171 cacgttttctcatcaccatccataacatccctccact 207  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  21641337 cacgttttttcatcaccatccataacctccctccact 21641301  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 38661337 - 38661365
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  38661337 aaactagtgggtgtgttctagcaaatccc 38661365  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 40234283 - 40234311
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  40234283 aaactagtgggtgtgttctagcaaatccc 40234311  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 452343 - 452315
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  452343 aaactagtgggtgtgttctagcaaatccc 452315  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 34103209 - 34103237
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  34103209 aaactagtgggtgtgttctagcaaatccc 34103237  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 42556543 - 42556571
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  42556543 aaactagtgggtgtgttctagcaaatccc 42556571  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 938884 - 938856
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  938884 aaactagtgggtgtgttctagcaaatccc 938856  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 8047947 - 8047919
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  8047947 aaactagtgggtgtgttctagcaaatccc 8047919  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 15230287 - 15230315
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  15230287 aaactagtgggtgtgttctagcaaatccc 15230315  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 22479429 - 22479457
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  22479429 aaactagtgggtgtgttctagcaaatccc 22479457  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 24720484 - 24720512
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  24720484 aaactagtgggtgtgttctagcaaatccc 24720512  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 26380049 - 26380021
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  26380049 aaactagtgggtgtgttctagcaaatccc 26380021  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 27168460 - 27168488
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  27168460 aaactagtgggtgtgttctagcaaatccc 27168488  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 27812165 - 27812193
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  27812165 aaactagtgggtgtgttctagcaaatccc 27812193  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 37138909 - 37138881
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  37138909 aaactagtgggtgtgttctagcaaatccc 37138881  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 48454754 - 48454782
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  48454754 aaactagtgggtgtgttctagcaaatccc 48454782  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 25061646 - 25061618
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  25061646 aaactagtgggtgtgttctagcaaatccc 25061618  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 33730506 - 33730478
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  33730506 aaactagtgggtgtgttctagcaaatccc 33730478  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 6137720 - 6137748
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  6137720 aaactagtgggtgtgttctagcaaatccc 6137748  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 13621340 - 13621368
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  13621340 aaactagtgggtgtgttctagcaaatccc 13621368  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 34683023 - 34682995
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  34683023 aaactagtgggtgtgttctagcaaatccc 34682995  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 41172652 - 41172680
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  41172652 aaactagtgggtgtgttctagcaaatccc 41172680  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 48560240 - 48560268
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  48560240 aaactagtgggtgtgttctagcaaatccc 48560268  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 3800174 - 3800146
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  3800174 aaactagtgggtgtgttctagcaaatccc 3800146  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 27359975 - 27359947
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  27359975 aaactagtgggtgtgttctagcaaatccc 27359947  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 45293170 - 45293198
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  45293170 aaactagtgggtgtgttctagcaaatccc 45293198  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 47461912 - 47461940
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  47461912 aaactagtgggtgtgttctagcaaatccc 47461940  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 16513062 - 16513034
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  16513062 aaactagtgggtgtgttctagcaaatccc 16513034  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 23175379 - 23175351
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  23175379 aaactagtgggtgtgttctagcaaatccc 23175351  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 23586636 - 23586608
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  23586636 aaactagtgggtgtgttctagcaaatccc 23586608  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 34082773 - 34082801
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  34082773 aaactagtgggtgtgttctagcaaatccc 34082801  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 13385946 - 13385974
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  13385946 aaactagtgggtgtgttctagcaaatccc 13385974  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 16005552 - 16005524
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  16005552 aaactagtgggtgtgttctagcaaatccc 16005524  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 50559457 - 50559485
Alignment:
Q  29 aaactagtgggtgtgttctagcaaatccc 57  Q
    |||||||||||||||||||||||||||||    
T  50559457 aaactagtgggtgtgttctagcaaatccc 50559485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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