View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_2 (Length: 761)
Name: NF0643_low_2
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 94 - 444
Target Start/End: Complemental strand, 4762185 - 4761834
Alignment:
| Q |
94 |
catcatcatttccatgaagaaaacatagagccaatttctggttcatacctataaacaaaacaaatcccacaaattcatcagaaaa-ttccatcacttcca |
192 |
Q |
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| T |
4762185 |
catcatcatttccatgaagaaaacatagagccaatttctggttcatacctataaacaaaacaaatcccacaaattcatcagaaaaattccatcacttcca |
4762086 |
T |
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| Q |
193 |
aaaattagaaaccattaaaattacatatatgcaaaaccactttagatcaaataacacaaaacctaacaggaaaaaagaaataattggttatcctctgcgc |
292 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
4762085 |
aaaattagaaaccattaaaattacatttatgcaaaaccactttagatcaaataacacaaaacctaacaggaaaaaagaaataatcggttatcctttgcgc |
4761986 |
T |
|
| Q |
293 |
gcaaatacatcagatttattatacatgtgagaaaatgtataaaacaaacaaacagatagaaagctcatgacgatccactacaaagaaaactatatatgaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761985 |
gcaaatacatcagatttattatacatgtgagaaaatgtataaaacaaacaaacagatagaaagctcatgacgatccactacaaagaaaactatatatgaa |
4761886 |
T |
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| Q |
393 |
ataaaggaaatcaaccttaaaataagcataaaatatcaaattatgcagaatt |
444 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4761885 |
ataaaggaaatcaaccttaaaataagcataaaagatcaaattatgcagaatt |
4761834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 517 - 761
Target Start/End: Complemental strand, 4761761 - 4761519
Alignment:
| Q |
517 |
cacgtaacatgtgcagaaaaacttgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaataataataaaatgaaactttacatttat |
616 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761761 |
cacgtaacatgtgcagaaaaacatgagtaaattaagaaacctctctatttcatgatgttgaagatagaaaaataataataaaatgaaactttacatttat |
4761662 |
T |
|
| Q |
617 |
agggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacga |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761661 |
agggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttgtcttgtcttgtggtaacga |
4761562 |
T |
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| Q |
717 |
tttcaattgcgtgtatgaatatgtccttttcatagaacaattggg |
761 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
4761561 |
tttcaattgcgtgtatga--atgtccttttcattgaacaattggg |
4761519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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