View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_20 (Length: 338)
Name: NF0643_low_20
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 98 - 274
Target Start/End: Complemental strand, 43802278 - 43802102
Alignment:
| Q |
98 |
tcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
197 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802278 |
tcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
43802179 |
T |
|
| Q |
198 |
gacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatccctatgct |
274 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43802178 |
gacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtccttatgct |
43802102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 43812847 - 43812686
Alignment:
| Q |
98 |
tcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
197 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||||||| |
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| T |
43812847 |
tcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaat |
43812748 |
T |
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| Q |
198 |
gacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtcta |
259 |
Q |
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||||||| ||| |||||||||| |||| |||| |||||| ||||||||||||||||||||| |
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| T |
43812747 |
gacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtcta |
43812686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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