View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_21 (Length: 337)
Name: NF0643_low_21
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 9524717 - 9524617
Alignment:
| Q |
136 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaagcacggccttca |
235 |
Q |
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| T |
9524717 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcgggttataaccactggcttcaaccaaagtacgaccttca |
9524618 |
T |
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| Q |
236 |
t |
236 |
Q |
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| |
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| T |
9524617 |
t |
9524617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 9497699 - 9497606
Alignment:
| Q |
143 |
gcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaagcacggccttcat |
236 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | | ||||||||| |
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| T |
9497699 |
gcgagtaattgctcagcatcattatcatattcaggatcgaattcctgtcttttcgggttataaccactgacttcaaccaaggaagggccttcat |
9497606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 23044519 - 23044607
Alignment:
| Q |
136 |
catatcagcgagtaatttctcagcatcatcatcatattcaggatcgaattcttgtcttttcaggttataaccactggcttcaaccaaag |
224 |
Q |
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|||||| |||||||||||||||||||||| |||||| ||| ||| ||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
23044519 |
catatcggcgagtaatttctcagcatcattatcatactcaatatcaaattcctgccttttcgggttataaccactggcttcaaccaaag |
23044607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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