View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0643_low_25 (Length: 323)

Name: NF0643_low_25
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0643_low_25
NF0643_low_25
[»] chr8 (11 HSPs)
chr8 (156-269)||(32643901-32644010)
chr8 (33-105)||(32644007-32644078)
chr8 (33-66)||(4835517-4835550)
chr8 (33-66)||(15809852-15809885)
chr8 (33-66)||(17792904-17792937)
chr8 (33-74)||(18757340-18757381)
chr8 (33-66)||(35448622-35448655)
chr8 (34-66)||(17656617-17656649)
chr8 (34-66)||(23567485-23567517)
chr8 (33-65)||(24473256-24473288)
chr8 (33-65)||(39657708-39657740)
[»] chr4 (23 HSPs)
chr4 (30-69)||(37059707-37059746)
chr4 (33-69)||(2124340-2124376)
chr4 (30-66)||(30779342-30779378)
chr4 (33-69)||(33819687-33819723)
chr4 (38-70)||(38563800-38563832)
chr4 (33-69)||(53865255-53865291)
chr4 (33-66)||(1492671-1492704)
chr4 (33-66)||(6841820-6841853)
chr4 (33-66)||(8165761-8165794)
chr4 (33-66)||(10473660-10473693)
chr4 (33-66)||(12722736-12722769)
chr4 (33-66)||(17109930-17109963)
chr4 (33-66)||(21995669-21995702)
chr4 (33-66)||(22180205-22180238)
chr4 (33-66)||(26577260-26577293)
chr4 (33-66)||(31763120-31763153)
chr4 (33-66)||(33883293-33883326)
chr4 (33-66)||(36924240-36924273)
chr4 (33-66)||(45256907-45256940)
chr4 (30-66)||(17109718-17109754)
chr4 (33-69)||(25715639-25715675)
chr4 (35-67)||(31762927-31762959)
chr4 (33-69)||(36309629-36309665)
[»] chr7 (13 HSPs)
chr7 (30-66)||(5728624-5728660)
chr7 (30-66)||(38837738-38837774)
chr7 (35-69)||(34227672-34227706)
chr7 (33-66)||(11732041-11732074)
chr7 (33-66)||(15973859-15973892)
chr7 (33-66)||(26945726-26945759)
chr7 (33-66)||(44426597-44426630)
chr7 (33-66)||(46004547-46004580)
chr7 (33-66)||(46572573-46572606)
chr7 (37-69)||(6620813-6620845)
chr7 (30-66)||(31365270-31365306)
chr7 (33-69)||(44426811-44426847)
chr7 (33-65)||(48692062-48692094)
[»] chr5 (10 HSPs)
chr5 (30-66)||(22695549-22695585)
chr5 (33-66)||(3340589-3340622)
chr5 (33-66)||(11660792-11660825)
chr5 (33-66)||(15559048-15559081)
chr5 (33-66)||(25545584-25545617)
chr5 (33-66)||(35662066-35662099)
chr5 (33-66)||(39861792-39861825)
chr5 (33-65)||(11660994-11661026)
chr5 (34-66)||(20134412-20134444)
chr5 (33-69)||(35662245-35662281)
[»] chr3 (12 HSPs)
chr3 (33-69)||(12974008-12974044)
chr3 (32-66)||(12974201-12974235)
chr3 (35-69)||(36185722-36185756)
chr3 (33-66)||(8036799-8036832)
chr3 (33-66)||(8719149-8719182)
chr3 (33-66)||(9071036-9071069)
chr3 (33-66)||(27068531-27068564)
chr3 (30-63)||(27446222-27446255)
chr3 (33-66)||(36185917-36185950)
chr3 (33-66)||(50416479-50416512)
chr3 (33-66)||(50416576-50416609)
chr3 (33-66)||(51361522-51361555)
[»] chr1 (21 HSPs)
chr1 (33-69)||(17811295-17811331)
chr1 (33-69)||(42134145-42134181)
chr1 (33-68)||(9628611-9628646)
chr1 (34-69)||(29945429-29945464)
chr1 (33-66)||(1395363-1395396)
chr1 (33-66)||(9041063-9041096)
chr1 (33-66)||(10974632-10974665)
chr1 (33-66)||(14229171-14229204)
chr1 (33-66)||(14389843-14389876)
chr1 (33-66)||(17893285-17893318)
chr1 (33-66)||(31763985-31764018)
chr1 (33-66)||(33156991-33157024)
chr1 (30-66)||(12796422-12796458)
chr1 (33-69)||(17893068-17893104)
chr1 (33-69)||(18928967-18929003)
chr1 (33-69)||(18952403-18952439)
chr1 (33-69)||(24368624-24368660)
chr1 (34-66)||(32143782-32143814)
chr1 (33-69)||(32595295-32595331)
chr1 (33-69)||(45849104-45849140)
chr1 (34-66)||(49992517-49992549)
[»] scaffold0516 (1 HSPs)
scaffold0516 (33-66)||(1260-1293)
[»] scaffold0249 (1 HSPs)
scaffold0249 (33-66)||(23543-23576)
[»] scaffold0129 (1 HSPs)
scaffold0129 (33-66)||(20132-20165)
[»] scaffold0126 (1 HSPs)
scaffold0126 (33-66)||(37632-37665)
[»] scaffold0102 (1 HSPs)
scaffold0102 (33-66)||(33615-33648)
[»] chr6 (7 HSPs)
chr6 (33-66)||(10588965-10588998)
chr6 (33-66)||(19284370-19284403)
chr6 (33-66)||(21385001-21385034)
chr6 (33-66)||(22857487-22857520)
chr6 (33-69)||(10698573-10698609)
chr6 (33-69)||(14237774-14237810)
chr6 (33-69)||(19281279-19281315)
[»] chr2 (10 HSPs)
chr2 (33-66)||(20661395-20661428)
chr2 (33-66)||(24183609-24183642)
chr2 (33-66)||(31783792-31783825)
chr2 (33-66)||(31783997-31784030)
chr2 (34-66)||(12449053-12449085)
chr2 (30-66)||(12449252-12449288)
chr2 (33-61)||(15252843-15252871)
chr2 (33-69)||(16111717-16111753)
chr2 (33-69)||(37867367-37867403)
chr2 (33-69)||(42364705-42364741)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 32644010 - 32643901
Alignment:
Q  156 atatcatgagatgaacgttgtaacggtattagaagtctcgtctatcactaactgtttgtttgggggtaaataaaagatttatttacactttgtgaagttt 255  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||    
T  32644010 atatcatgagatgaacgttgtaaccgtattagaagtctcgtctatcactaactg----tttgggggtaaatataagatttatttacactttgtgaagttt 32643915  T
Q  256 cattatattattcg 269  Q
    |||||| |||||||    
T  32643914 cattatgttattcg 32643901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 32644078 - 32644007
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgccgtgaagttaggtcccaacacggaaaatctgatatat 105  Q
    |||||||||||||| |||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||    
T  32644078 ggtgcataaggatt-ccttatgcaccataaccgcgccgtgcagtgagatcccaacacggaaaatctgatatat 32644007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 4835550 - 4835517
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  4835550 ggtgcataaggatttccttatgcaccataaccgc 4835517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 15809852 - 15809885
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  15809852 ggtgcataaggatttccttatgcaccataaccgc 15809885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17792904 - 17792937
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  17792904 ggtgcataaggatttccttatgcaccataaccgc 17792937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 18757340 - 18757381
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgccgtgaa 74  Q
    |||||||||||||||| |||||||| ||||||||||| ||||    
T  18757340 ggtgcataaggatttctttatgcaccataaccgcgccatgaa 18757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 35448622 - 35448655
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  35448622 ggtgcataaggatttccttatgcaccataaccgc 35448655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 17656649 - 17656617
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  17656649 gtgcataaggatttccttatgcaccataaccgc 17656617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 23567517 - 23567485
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  23567517 gtgcataaggatttccttatgcaccataaccgc 23567485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 24473256 - 24473288
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccg 65  Q
    ||||||||||||||||||||||||| |||||||    
T  24473256 ggtgcataaggatttccttatgcaccataaccg 24473288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 39657740 - 39657708
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccg 65  Q
    ||||||||||||||||||||||||| |||||||    
T  39657740 ggtgcataaggatttccttatgcaccataaccg 39657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 37059746 - 37059707
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  37059746 caaggtgcataaggatttccttatgcaccataaccgcgcc 37059707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 2124376 - 2124340
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2124376 ggtgcataaggatttccttatgcaccataaccgcgcc 2124340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 30779378 - 30779342
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30779378 caaggtgcataaggatttccttatgcaccataaccgc 30779342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 33819723 - 33819687
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33819723 ggtgcataaggatttccttatgcaccataaccgcgcc 33819687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 38563832 - 38563800
Alignment:
Q  38 ataaggatttccttatgcactataaccgcgccg 70  Q
    |||||||||||||||||||||||||||||||||    
T  38563832 ataaggatttccttatgcactataaccgcgccg 38563800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 53865255 - 53865291
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  53865255 ggtgcataaggatttccttatgcaccataaccgcgcc 53865291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 1492704 - 1492671
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  1492704 ggtgcataaggatttccttatgcaccataaccgc 1492671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 6841853 - 6841820
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  6841853 ggtgcataaggatttccttatgcaccataaccgc 6841820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 8165794 - 8165761
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  8165794 ggtgcataaggatttccttatgcaccataaccgc 8165761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 10473660 - 10473693
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  10473660 ggtgcataaggatttccttatgcaccataaccgc 10473693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 12722769 - 12722736
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  12722769 ggtgcataaggatttccttatgcaccataaccgc 12722736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17109930 - 17109963
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  17109930 ggtgcataaggatttccttatgcaccataaccgc 17109963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 21995702 - 21995669
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  21995702 ggtgcataaggatttccttatgcaccataaccgc 21995669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 22180238 - 22180205
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  22180238 ggtgcataaggatttccttatgcaccataaccgc 22180205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 26577293 - 26577260
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  26577293 ggtgcataaggatttccttatgcaccataaccgc 26577260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31763120 - 31763153
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  31763120 ggtgcataaggatttccttatgcaccataaccgc 31763153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 33883326 - 33883293
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  33883326 ggtgcataaggatttccttatgcaccataaccgc 33883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 36924273 - 36924240
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  36924273 ggtgcataaggatttccttatgcaccataaccgc 36924240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 45256907 - 45256940
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  45256907 ggtgcataaggatttccttatgcaccataaccgc 45256940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 17109754 - 17109718
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  17109754 caaggtacataaggatttccttatgcaccataaccgc 17109718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 25715675 - 25715639
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  25715675 ggtgcataaggatttccttatgcaccataaccacgcc 25715639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 31762959 - 31762927
Alignment:
Q  35 tgcataaggatttccttatgcactataaccgcg 67  Q
    ||||||||||||||||||||||| |||||||||    
T  31762959 tgcataaggatttccttatgcaccataaccgcg 31762927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 36309629 - 36309665
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  36309629 ggtgcataaggattttcttatgcaccataaccgcgcc 36309665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5728660 - 5728624
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5728660 caaggtgcataaggatttcctcatgcactataaccgc 5728624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 38837738 - 38837774
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||||||| ||||||||    
T  38837738 caaggtgcataaggatttccttatgcaccataaccgc 38837774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 34227706 - 34227672
Alignment:
Q  35 tgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||| |||||||||||    
T  34227706 tgcataaggatttccttatgcaccataaccgcgcc 34227672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 11732074 - 11732041
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  11732074 ggtgcataaggatttccttatgcaccataaccgc 11732041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 15973892 - 15973859
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  15973892 ggtgcataaggatttccttatgcaccataaccgc 15973859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 26945726 - 26945759
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  26945726 ggtgcataaggatttccttatgcaccataaccgc 26945759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 44426630 - 44426597
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  44426630 ggtgcataaggatttccttatgcaccataaccgc 44426597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 46004547 - 46004580
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  46004547 ggtgcataaggatttccttatgcaccataaccgc 46004580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 46572606 - 46572573
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  46572606 ggtgcataaggatttccttatgcaccataaccgc 46572573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 6620813 - 6620845
Alignment:
Q  37 cataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||| |||||||||||    
T  6620813 cataaggatttccttatgcaccataaccgcgcc 6620845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 31365306 - 31365270
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  31365306 caagatgcataaggatttccttatgcaccataaccgc 31365270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 44426811 - 44426847
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44426811 ggtgcataaagatttccttatgcaccataaccgcgcc 44426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 48692062 - 48692094
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccg 65  Q
    ||||||||||||||||||||||||| |||||||    
T  48692062 ggtgcataaggatttccttatgcaccataaccg 48692094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 22695549 - 22695585
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||||||| ||||||||    
T  22695549 caaggtgcataaggatttccttatgcaccataaccgc 22695585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 3340622 - 3340589
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  3340622 ggtgcataaggatttccttatgcaccataaccgc 3340589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 11660825 - 11660792
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  11660825 ggtgcataaggatttccttatgcaccataaccgc 11660792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 15559081 - 15559048
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  15559081 ggtgcataaggatttccttatgcaccataaccgc 15559048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 25545584 - 25545617
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  25545584 ggtgcataaggatttccttatgcaccataaccgc 25545617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 35662099 - 35662066
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  35662099 ggtgcataaggatttccttatgcaccataaccgc 35662066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 39861792 - 39861825
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  39861792 ggtgcataaggatttccttatgcaccataaccgc 39861825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 11660994 - 11661026
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccg 65  Q
    ||||||||||||||||||||||||| |||||||    
T  11660994 ggtgcataaggatttccttatgcaccataaccg 11661026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 20134412 - 20134444
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  20134412 gtgcataaggatttccttatgcaccataaccgc 20134444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 35662245 - 35662281
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||||||| |||||||||||||| |||||||||||    
T  35662245 ggtgcataagtatttccttatgcaccataaccgcgcc 35662281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 12974044 - 12974008
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12974044 ggtgcataaggatttccttatgcaccataaccgcgcc 12974008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 12974201 - 12974235
Alignment:
Q  32 aggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||||| ||||||||    
T  12974201 aggtgcataaggatttccttatgcaccataaccgc 12974235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 36185756 - 36185722
Alignment:
Q  35 tgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||| |||||||||||    
T  36185756 tgcataaggatttccttatgcaccataaccgcgcc 36185722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 8036832 - 8036799
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  8036832 ggtgcataaggatttccttatgcaccataaccgc 8036799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 8719149 - 8719182
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  8719149 ggtgcataaggatttccttatgcaccataaccgc 8719182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 9071036 - 9071069
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  9071036 ggtgcataaggatttccttatgcaccataaccgc 9071069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 27068564 - 27068531
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  27068564 ggtgcataaggatttccttatgcaccataaccgc 27068531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 27446222 - 27446255
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataac 63  Q
    |||||||||||||||||||||||||||| |||||    
T  27446222 caaggtgcataaggatttccttatgcaccataac 27446255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 36185917 - 36185950
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  36185917 ggtgcataaggatttccttatgcaccataaccgc 36185950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 50416512 - 50416479
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  50416512 ggtgcataaggatttccttatgcaccataaccgc 50416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 50416576 - 50416609
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  50416576 ggtgcataaggatttccttatgcaccataaccgc 50416609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 51361555 - 51361522
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  51361555 ggtgcataaggatttccttatgcaccataaccgc 51361522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 17811295 - 17811331
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17811295 ggtgcataaggatttccttatgcaccataaccgcgcc 17811331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 42134145 - 42134181
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||||||||    
T  42134145 ggtgcataaggatttccttatgcaccataaccgcgcc 42134181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 9628611 - 9628646
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgc 68  Q
    ||||||||||||||||||||||||| ||||||||||    
T  9628611 ggtgcataaggatttccttatgcaccataaccgcgc 9628646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 29945429 - 29945464
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||||||||||||||||||||| |||||||||||    
T  29945429 gtgcataaggatttccttatgcaccataaccgcgcc 29945464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 1395363 - 1395396
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  1395363 ggtgcataaggatttccttatgcaccataaccgc 1395396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 9041063 - 9041096
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  9041063 ggtgcataaggatttccttatgcaccataaccgc 9041096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 10974665 - 10974632
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  10974665 ggtgcataaggatttccttatgcaccataaccgc 10974632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 14229204 - 14229171
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  14229204 ggtgcataaggatttccttatgcaccataaccgc 14229171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 14389876 - 14389843
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||||| ||||||    
T  14389876 ggtgcataaggatttccttatgcactacaaccgc 14389843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 17893285 - 17893318
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  17893285 ggtgcataaggatttccttatgcaccataaccgc 17893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31763985 - 31764018
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  31763985 ggtgcataaggatttccttatgcaccataaccgc 31764018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 33157024 - 33156991
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  33157024 ggtgcataaggatttccttatgcaccataaccgc 33156991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 12796458 - 12796422
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  12796458 caaggtgcagaaggatttccttatgcaccataaccgc 12796422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 17893104 - 17893068
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  17893104 ggtgcataaggatttccttatgcaccataaccacgcc 17893068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 18928967 - 18929003
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  18928967 ggtgcataaagatttccttatgcaccataaccgcgcc 18929003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 18952439 - 18952403
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||||||||||||| |||||||| |||||||||||    
T  18952439 ggtgcataaggatttctttatgcacgataaccgcgcc 18952403  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 24368624 - 24368660
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  24368624 ggtgcataaggattttcttatgcaccataaccgcgcc 24368660  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 32143782 - 32143814
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  32143782 gtgcataaggatttccttatgcaccataaccgc 32143814  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 32595295 - 32595331
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32595295 ggtgcataaggatttccttatgcaccataaccacgcc 32595331  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 45849140 - 45849104
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  45849140 ggtgcataaggatttccttatgcaccataatcgcgcc 45849104  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 49992549 - 49992517
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  49992549 gtgcataaggatttccttatgcaccataaccgc 49992517  T

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Target: scaffold0516 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 1260 - 1293
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  1260 ggtgcataaggatttccttatgcaccataaccgc 1293  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 23576 - 23543
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  23576 ggtgcataaggatttccttatgcaccataaccgc 23543  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 20132 - 20165
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  20132 ggtgcataaggatttccttatgcaccataaccgc 20165  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 37665 - 37632
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  37665 ggtgcataaggatttccttatgcacaataaccgc 37632  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 33648 - 33615
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  33648 ggtgcataaggatttccttatgcaccataaccgc 33615  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 10588965 - 10588998
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  10588965 ggtgcataaggatttccttatgcaccataaccgc 10588998  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 19284403 - 19284370
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  19284403 ggtgcataaggatttccttatgcaccataaccgc 19284370  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 21385001 - 21385034
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  21385001 ggtgcataaggatttccttatgcaccataaccgc 21385034  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 22857520 - 22857487
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  22857520 ggtgcataaggatttccttatgcaccataaccgc 22857487  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 10698609 - 10698573
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||| |||||||||||||||||| |||||||||||    
T  10698609 ggtgcacaaggatttccttatgcaccataaccgcgcc 10698573  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 14237810 - 14237774
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  14237810 ggtgcataaggatttccttatgcaccataacctcgcc 14237774  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 19281315 - 19281279
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||| |||||||||||||||||| |||||||||||    
T  19281315 ggtgcacaaggatttccttatgcaccataaccgcgcc 19281279  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 20661428 - 20661395
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  20661428 ggtgcataaggatttccttatgcaccataaccgc 20661395  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 24183609 - 24183642
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  24183609 ggtgcataaggatttccttatgcaccataaccgc 24183642  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 31783825 - 31783792
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  31783825 ggtgcataaggatttccttatgcaccataaccgc 31783792  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31783997 - 31784030
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgc 66  Q
    ||||||||||||||||||||||||| ||||||||    
T  31783997 ggtgcataaggatttccttatgcaccataaccgc 31784030  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 12449085 - 12449053
Alignment:
Q  34 gtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||||||||||||||| ||||||||    
T  12449085 gtgcataaggatttccttatgcaccataaccgc 12449053  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 12449252 - 12449288
Alignment:
Q  30 caaggtgcataaggatttccttatgcactataaccgc 66  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  12449252 caaggtgcataaagatttccttatgcaccataaccgc 12449288  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 15252871 - 15252843
Alignment:
Q  33 ggtgcataaggatttccttatgcactata 61  Q
    |||||||||||||||||||||||||||||    
T  15252871 ggtgcataaggatttccttatgcactata 15252843  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 16111717 - 16111753
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  16111717 ggtgcataaagatttccttatgcaccataaccgcgcc 16111753  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 37867367 - 37867403
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    |||||||||||||||||||||||||  ||||||||||    
T  37867367 ggtgcataaggatttccttatgcaccgtaaccgcgcc 37867403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 42364705 - 42364741
Alignment:
Q  33 ggtgcataaggatttccttatgcactataaccgcgcc 69  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  42364705 ggtgcataaggatttccttttgcaccataaccgcgcc 42364741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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