View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_28 (Length: 305)
Name: NF0643_low_28
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4765513 - 4765770
Alignment:
| Q |
1 |
ccatttatgcttctggtttatttcatcttactcttatggtatatatatgtaagggaataatcctatccttatggatattattaaagatcctctatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765513 |
ccatttatgcttctggtttatttcatcttactcttatggtatatatatgtaagggaataatcctatccttatggatattattaaagatcctctatttcaa |
4765612 |
T |
|
| Q |
101 |
tgttttgtttccacaaatggtaattatctcatcaattaaaggagttggaggatttaaaggattgcgattcaaactccagtgaagaagaaaatacgaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
4765613 |
tgttttgtttccacaaatggtaattatctcatcaattaaaggagttggaggatttaaaggatcgcgattcaaagtccagtgaagaagaaaatacgaacat |
4765712 |
T |
|
| Q |
201 |
aacagctaatatactaacatttcctcatccaaaagcaaaaggagaacaatacgcatgg |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765713 |
aacagctaatatactaacatttcctcatccaaaagcaaaaggagaacaatacgcatgg |
4765770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 4761377 - 4761328
Alignment:
| Q |
253 |
gcatggtaagatataataagaaaaatggttctggttccacttagtcatga |
302 |
Q |
| |
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| T |
4761377 |
gcatggtaagatataataagaaaaatgattctggttccacttagtcatga |
4761328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 30599127 - 30599082
Alignment:
| Q |
177 |
cagtgaagaagaaaatacgaacataacagctaatatactaacattt |
222 |
Q |
| |
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|||||||| ||||||||||||||||||| | ||||||||||||||| |
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|
| T |
30599127 |
cagtgaaggagaaaatacgaacataacaaccaatatactaacattt |
30599082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 3028602 - 3028558
Alignment:
| Q |
181 |
gaagaagaaaatacgaacataacagctaatatactaacatttcct |
225 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
3028602 |
gaagtagaaaatactaacataacaactaatatactaacatttcct |
3028558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 26533836 - 26533877
Alignment:
| Q |
181 |
gaagaagaaaatacgaacataacagctaatatactaacattt |
222 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
26533836 |
gaaggagaaaatactaacataacaactaatatactaacattt |
26533877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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