View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_29 (Length: 303)
Name: NF0643_low_29
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 48895987 - 48895693
Alignment:
| Q |
2 |
tctcttgaacaaattaattttagttgcactaaattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895987 |
tctcttgaacaaattaattttagttgcactaaattatgccctgaatcccgttcaaaagagaactatcttgtgagtattatcttgagaaatatctcgttga |
48895888 |
T |
|
| Q |
102 |
gaactcaaattcctcaccaactcatgcattttgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895887 |
gaactcaaattcctcaccaactcatgcattttgaaaacattccatcatttctattctctctttctttcctacaactcctaatagctacgatcattctcat |
48895788 |
T |
|
| Q |
202 |
aatacccattctgctaacaggggcaaacacttgagtataattttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48895787 |
aatacccattctgctaacaggggcaaacacttgagtataa-tttactccatgctcctatttctgcatgctcatgacttgcaacttttatctctgct |
48895693 |
T |
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