View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_3 (Length: 611)
Name: NF0643_low_3
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_3 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 95 - 611
Target Start/End: Complemental strand, 26889089 - 26888573
Alignment:
| Q |
95 |
aaccatatgtgttggtgtcgtgttagtgtcagacacatgtcggactctgacacatctttgaagagaagtgtatgtgctacaatgcatcttccacagtaaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26889089 |
aaccatatgtgttggtgtcgtgttagtgtcagacacacgtcggactctgacacatctttgaagagaagtgtatgtgctacaaagcatcttccacagtaaa |
26888990 |
T |
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| Q |
195 |
ttgaaacaatattttagactgcacaaacttcatgtctcacaatttaaaaaacttcttcagttagaaacaatgattttgtaattgactatagtatgtacgt |
294 |
Q |
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| T |
26888989 |
ttgaaacaatattttagactgcacaaacttcatgtctcacaatttaaaaaacttcttcagttagaaacaatgattttgtaattgactatagtatgtacat |
26888890 |
T |
|
| Q |
295 |
aaatttattaacgtttatactaatgataatgatcgaaagtgtaaacagcaaaccacaaacctggttctccttttcttttctcttctttgcacacttttcc |
394 |
Q |
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||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26888889 |
aaattaattaacgtttatactaacgataatgatctaaagtgtaaacagcaaaccacaaacctggttctccttttcttttctcttctttggacacttttcc |
26888790 |
T |
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| Q |
395 |
ctagtcgctcagcgagcaaataaagaagctattcgctcgaataatagactcatacagtgaatatcacatcttccaagttgttctgtctcagaaacttcca |
494 |
Q |
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|||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26888789 |
ctagtctcttagcgagcaaataaagaagctattcgctcgaacaatagactcatacagtgaatatcacatcttccaagttgttctgtctcagaaacttcca |
26888690 |
T |
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| Q |
495 |
agctctgcatctgtacagtttctgtctcagaaacttccaagttctgcctctgcactgtttttgtctcagaaatttccaagctcttatcttcatctgattt |
594 |
Q |
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| T |
26888689 |
agctctgcatctgtacagtttctgtctcagaaacttccaagttctgcctctgcactgtttttgtctcagaaatttccaagctcttatcttcatctgattt |
26888590 |
T |
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| Q |
595 |
tgtgtctctataaggac |
611 |
Q |
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||| |||||| |||||| |
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| T |
26888589 |
tgtctctctacaaggac |
26888573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 27423824 - 27423889
Alignment:
| Q |
157 |
gagaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatattttagactgcacaaac |
222 |
Q |
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| T |
27423824 |
gagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatattttagagtgaacaaac |
27423889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 26852554 - 26852427
Alignment:
| Q |
224 |
tcatgtctcacaatttaaaaaacttcttcagttagaaacaatgattttgtaattgactatagtatgtacgtaaatttattaacgtttatactaatgataa |
323 |
Q |
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| T |
26852554 |
tcatgtctcatcatttgaaaaacttctccaactagaaacaacgaatttgcaattgactata-----tacagaaattaatcaacatttgtaataatgataa |
26852460 |
T |
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| Q |
324 |
tgatcgaaagtgtaaacagcaaaccacaaacct |
356 |
Q |
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| T |
26852459 |
tgatataaagtgtaaacagcaaaccacaaacct |
26852427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 26852641 - 26852570
Alignment:
| Q |
157 |
gagaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatatttt-agactgcacaaacttcat |
227 |
Q |
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| T |
26852641 |
gagaagtgtttgtgctacaaagcatcctcaaatgtaaattgaaacaatattttaagagtgcacaaacatcat |
26852570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 26806303 - 26806241
Alignment:
| Q |
159 |
gaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatattttagactgcacaaa |
221 |
Q |
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||||||| |||||||||| |||| || ||| |||||| |||||||||| ||||||||||||| |
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| T |
26806303 |
gaagtgtttgtgctacaaaacatcctcaacattaaattcaaacaatattctagactgcacaaa |
26806241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 27589569 - 27589629
Alignment:
| Q |
157 |
gagaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatattttagactgca |
217 |
Q |
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||||| ||| |||||||||| |||| | |||| |||||| |||||||||||||||||||| |
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| T |
27589569 |
gagaattgtttgtgctacaaaacatcctgcacattaaattcaaacaatattttagactgca |
27589629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 63539 - 63474
Alignment:
| Q |
157 |
gagaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatattttagactgcacaaac |
222 |
Q |
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| T |
63539 |
gagaagtgtatgtgctacaaagcatcctccacagtaagttgaagcaatattttagagtgaacaaac |
63474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 264713 - 264777
Alignment:
| Q |
157 |
gagaagtgtatgtgctacaatgcatcttccacagtaaattgaaacaatattttagactgcacaaa |
221 |
Q |
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||||||||| |||||||||| |||| |||||| || ||| |||||||||||||||||||||||| |
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| T |
264713 |
gagaagtgtttgtgctacaaaacatcctccacattatattcaaacaatattttagactgcacaaa |
264777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 556 - 610
Target Start/End: Original strand, 18650520 - 18650574
Alignment:
| Q |
556 |
tgtctcagaaatttccaagctcttatcttcatctgattttgtgtctctataagga |
610 |
Q |
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| T |
18650520 |
tgtctcagaaacttacaagctctgatattcatctgattttctgtttctataagga |
18650574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 553 - 595
Target Start/End: Original strand, 18674216 - 18674258
Alignment:
| Q |
553 |
ttttgtctcagaaatttccaagctcttatcttcatctgatttt |
595 |
Q |
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|||||||||||||| ||||||| ||| |||||||||||||||| |
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| T |
18674216 |
ttttgtctcagaaacttccaagttctgatcttcatctgatttt |
18674258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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