View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_33 (Length: 252)
Name: NF0643_low_33
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 47037836 - 47038058
Alignment:
| Q |
30 |
caaacaccatattcatgaaacgcattattcactgatttaaataaagagtaattcttcatcttaattaaaagtaggttacattatttatgacaattgacaa |
129 |
Q |
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| T |
47037836 |
caaacaccatattcatgaaacgcattattcactgatttaaataaagagtaatttttcatcttaattaaaagtaggttacattatttatgacaattgacaa |
47037935 |
T |
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| Q |
130 |
gggtctacagtattatctattttttcatgtatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037936 |
gggtctacagtattatctattttttcatgtatcctctgttaacaattctaacaaacaggacgaaaaaagagtaagaaaagttgcaatttccatcatcata |
47038035 |
T |
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| Q |
230 |
acaaaatattgggttgattaata |
252 |
Q |
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| T |
47038036 |
acaaaatattgggttgattaata |
47038058 |
T |
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