View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_37 (Length: 213)
Name: NF0643_low_37
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 40667098 - 40667242
Alignment:
| Q |
1 |
tttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccactc |
100 |
Q |
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| T |
40667098 |
tttggtgaaagtgatgccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccactc |
40667197 |
T |
|
| Q |
101 |
aggtttgtttctagttactataaactcatgcattgttatgttatt |
145 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40667198 |
aggtttgtttctagttactataaactcatgcattgctatgttatt |
40667242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 40722907 - 40722762
Alignment:
| Q |
1 |
tttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccactc |
100 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40722907 |
tttggtgaaagtgaagccaatgttagggaaatttttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgattccattgccactc |
40722808 |
T |
|
| Q |
101 |
aggtttg-tttctagttactataaactcatgcattgttatgttatt |
145 |
Q |
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||||| | |||||||||||||||||||| || |||| ||||||||| |
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| T |
40722807 |
aggttggttttctagttactataaactcctggattgctatgttatt |
40722762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 41091913 - 41091809
Alignment:
| Q |
1 |
tttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccactc |
100 |
Q |
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||||| ||||||||||| || || |||||||| ||||||||||| | || |||||||||||||| || |||||||| |||||||||||||| |||| |
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| T |
41091913 |
tttggagaaagtgaggcaaacgtgagggaaatttttgacaaggcccgtggttctgctccatgtgtcctattctttgatgaacttgactccattgcaactc |
41091814 |
T |
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| Q |
101 |
aggtt |
105 |
Q |
| |
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||||| |
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|
| T |
41091813 |
aggtt |
41091809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27978421 - 27978528
Alignment:
| Q |
1 |
tttggtgaaagtgaggccaatgttagggaaatatttgacaaggctagacaatcagctccatgtgtcctcttttttgatgagcttgactccattgccactc |
100 |
Q |
| |
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||||| ||||||||||| ||||| |||||||| |||||||| ||| | || |||||||||||||| || |||||||| ||||| || ||||| |||| |
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| T |
27978421 |
tttggagaaagtgaggctaatgtgagggaaatttttgacaaagctcgtggttctgctccatgtgtccttttctttgatgaacttgattctattgcaactc |
27978520 |
T |
|
| Q |
101 |
aggtttgt |
108 |
Q |
| |
|
|||||||| |
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|
| T |
27978521 |
aggtttgt |
27978528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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