View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0643_low_8 (Length: 476)

Name: NF0643_low_8
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0643_low_8
NF0643_low_8
[»] chr5 (4 HSPs)
chr5 (1-376)||(38434717-38435092)
chr5 (195-376)||(26354249-26354430)
chr5 (194-376)||(9815649-9815831)
chr5 (50-98)||(9816746-9816794)
[»] chr3 (16 HSPs)
chr3 (203-376)||(19956699-19956872)
chr3 (197-357)||(19832504-19832664)
chr3 (201-376)||(19819175-19819350)
chr3 (202-376)||(19839008-19839182)
chr3 (196-376)||(19812898-19813078)
chr3 (195-376)||(20033656-20033837)
chr3 (197-376)||(26653763-26653942)
chr3 (195-376)||(19951739-19951920)
chr3 (223-376)||(20035953-20036106)
chr3 (194-302)||(20046809-20046917)
chr3 (194-376)||(20015522-20015704)
chr3 (195-376)||(26647619-26647800)
chr3 (200-376)||(19990140-19990316)
chr3 (197-345)||(20007596-20007744)
chr3 (180-357)||(19849630-19849807)
chr3 (52-98)||(20032689-20032735)
[»] chr8 (2 HSPs)
chr8 (197-369)||(22655640-22655812)
chr8 (283-376)||(11544685-11544778)
[»] chr1 (1 HSPs)
chr1 (196-376)||(1717835-1718015)
[»] chr4 (1 HSPs)
chr4 (194-272)||(6397102-6397180)
[»] chr7 (3 HSPs)
chr7 (195-270)||(12579410-12579485)
chr7 (193-270)||(12495311-12495388)
chr7 (193-270)||(12519115-12519192)
[»] chr2 (1 HSPs)
chr2 (283-376)||(39191386-39191479)


Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 38434717 - 38435092
Alignment:
Q  1 tcatcacttttccttgacaaagttttcacaccagatttcctcatatgtgtgtaaaagcatagcaaaatatgttttagtcatgccaatactactaaagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38434717 tcatcacttttccttgacaaagttttcacaccagatttcctcatatgtgtgtaaaagcatagcaaaatatgtgttagtcatgccaatactactaaagaaa 38434816  T
Q  101 atgttaaagcatagaaaaatatctcattttggcatgatcacaagtacaacagacactcataaatgcatatatgtcatctttgcaacctaatgtcgattgc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38434817 atgttaaagcatagaaaaatatctcattttggcatgatcacaagcacaacagacactcataaatgcatatatgtcatcgttgcaacctaatgtcgattgc 38434916  T
Q  201 ttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaag 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38434917 ttccaccaccttgcataacgcttggtaacatctgcctcaaataatcttggtggaaaatacaaatttttatcaaatatgagactgcggtagtttttctaag 38435016  T
Q  301 caattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38435017 caattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 38435092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 195 - 376
Target Start/End: Original strand, 26354249 - 26354430
Alignment:
Q  195 gattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttt 294  Q
    |||||| |||||||| ||||||||||  |||| ||||||| |||| | | ||||||||| |||||||||| | |||||||||| ||  | || |||||||    
T  26354249 gattgcctccaccacattgcataacgtgtggttacatctgcctcataaagtcttggtgggaaatacaaatctgtatcaaatataagcctacaatagtttt 26354348  T
Q  295 tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    || |||||||  ||||||||||||| || ||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||||    
T  26354349 tccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactct 26354430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 9815831 - 9815649
Alignment:
Q  194 cgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagttt 293  Q
    |||||||||||||||| ||| ||| ||  |||||||||||| |||||| | ||||||||||||||||||||||| |||| |||| ||  | || ||||||    
T  9815831 cgattgcttccaccacattgtatatcgtgtggtaacatctgcctcaaaaagtcttggtggaaaatacaaattttgatcagatataagcctacaatagttt 9815732  T
Q  294 ttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||| |||| ||   |||||||||||| || ||| |||||||| |||||||||||||||| |||  ||||| ||||||| ||||    
T  9815731 ttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactct 9815649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 9816794 - 9816746
Alignment:
Q  50 tgtaaaagcatagcaaaatatgttttagtcatgccaatactactaaaga 98  Q
    ||||||||||||| |||| |||  ||||||||||||||| |||||||||    
T  9816794 tgtaaaagcatagtaaaacatgagttagtcatgccaatattactaaaga 9816746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 203 - 376
Target Start/End: Complemental strand, 19956872 - 19956699
Alignment:
Q  203 ccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaagca 302  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |  |||||||||||||| |||||    
T  19956872 ccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagtagtttttccaagca 19956773  T
Q  303 attgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||  ||||||||||||| ||||||   |||||||  ||||||||||||||||||| ||||| ||||||| ||||    
T  19956772 atgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactct 19956699  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 19832664 - 19832504
Alignment:
Q  197 ttgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttc 296  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||  |  ||||||||||||||    
T  19832664 ttgcttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttc 19832565  T
Q  297 taagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattc 357  Q
     |||||||  ||||||||||||| ||||||  ||||||||  |||||||||||||||||||    
T  19832564 caagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattc 19832504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 201 - 376
Target Start/End: Complemental strand, 19819350 - 19819175
Alignment:
Q  201 ttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaag 300  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||  |  |||||||||||||| |||    
T  19819350 ttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaag 19819251  T
Q  301 caattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||  ||||||||||||| ||||||  ||||||||  ||||||||||||||||||| ||| | ||||||| ||||    
T  19819250 caatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactct 19819175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 19839182 - 19839008
Alignment:
Q  202 tccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaagc 301  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |  |||| ||||||||| ||||    
T  19839182 tccaccaccttgcataacgtatggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcaatagtttttccaagc 19839083  T
Q  302 aattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    |||  |||||||| |||| ||||||  |||||||| ||||||||||||||| ||||  |||| ||||||| ||||    
T  19839082 aatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactct 19839008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 19813078 - 19812898
Alignment:
Q  196 attgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagttttt 295  Q
    |||||||||||||| |  ||||| || |||||||||||| |||||| | |||||||||||||||||| ||||||||| |||||||  |||||||||||||    
T  19813078 attgcttccaccacttgacataatgcgtggtaacatctgcctcaaaaagtcttggtggaaaatacaattttttatcagatatgagcctgcagtagttttt 19812979  T
Q  296 ctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    | | |||||   |||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  19812978 ccatgcaatcactttagttttattgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactct 19812898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 195 - 376
Target Start/End: Original strand, 20033656 - 20033837
Alignment:
Q  195 gattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttt 294  Q
    ||||||||||||||  ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| | ||| |    |||||||||     
T  20033656 gattgcttccaccagtttgcataacgcgtggtaacatctgcctcaaataatcttggtggaaaatacaaattttcatcagagatgggccgacagtagtttc 20033755  T
Q  295 tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    || ||||| |   ||||||||| || |||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||||    
T  20033756 tccaagcattctctttagtctcgttgaacctaggcacataacttggaacatcttgatccattccaaattgcatagcaactct 20033837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 26653942 - 26653763
Alignment:
Q  197 ttgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttc 296  Q
    ||||||||||||| ||||||||||| || | ||||||| |||||| || ||||||||||||||||||||||||| | | ||  |  |||||||||||| |    
T  26653942 ttgcttccaccactttgcataacgcatgatgacatctgcctcaaacaaccttggtggaaaatacaaatttttataagaaataggcctgcagtagttttcc 26653843  T
Q  297 taagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
     |||||||  ||||||||||||| ||||||  ||||||||||||||||||||| ||||||| ||||| ||||||| ||||    
T  26653842 caagcaatgtatttagtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactct 26653763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 19951920 - 19951739
Alignment:
Q  195 gattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttt 294  Q
    ||||||| ||||||| ||||||||||| || || |||| | |||||| | | ||| |||||||||||||||||||||| ||||| |  ||||||||||||    
T  19951920 gattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaaaatacaaatttttatcagatatgggcctgcagtagtttt 19951821  T
Q  295 tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    || |||||||   |||||| | ||| |||||| |||||||||| |||||||||||||| |||  ||||| ||||||| ||||    
T  19951820 tccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccattgcaaattgcatagcaactct 19951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 376
Target Start/End: Original strand, 20035953 - 20036106
Alignment:
Q  223 tggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaagcaattgatttagtctcatttaa 322  Q
    |||||||||||| |||||| | |||||||||||||||||| ||||||||| |||||||  ||||||||||| || |||||||   |||||| | |||  |    
T  20035953 tggtaacatctgcctcaaaaagtcttggtggaaaatacaattttttatcagatatgagcctgcagtagtttctccaagcaatcactttagttttattgca 20036052  T
Q  323 cctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||  ||| ||||| ||||||||||||||||||| ||||| ||||||| ||||    
T  20036053 cctagccacgtaactcggaacatcttgatcaattccaaattgcatagcaactct 20036106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 20046917 - 20046809
Alignment:
Q  194 cgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagttt 293  Q
    |||||||||||||||| || |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| | ||| |  ||||||||||     
T  20046917 cgattgcttccaccactttacataacgcatggtaacatctgcctcaaacaatcttggtggaaaatacaaatttttatcagacatgggcctgcagtagttg 20046818  T
Q  294 ttctaagca 302  Q
    ||| |||||    
T  20046817 ttccaagca 20046809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 20015522 - 20015704
Alignment:
Q  194 cgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagttt 293  Q
    |||||||||||||||| ||||||||||  |||  ||||||| |||||| | |||||||||||||||||| ||||||||| |||| ||  | || || | |    
T  20015522 cgattgcttccaccacattgcataacgtgtggctacatctgcctcaaagagtcttggtggaaaatacaagtttttatcagatataagcctacaataatat 20015621  T
Q  294 ttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||| ||||| |   |||||||||||| || ||| |||||| || ||||||||||||||| |||| ||||| ||||||| ||||    
T  20015622 ttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactct 20015704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 26647800 - 26647619
Alignment:
Q  195 gattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttt 294  Q
    ||||| ||||||||||||||||||||  | |||||||||| |||||| ||||| | ||| ||||||||| |  ||||| ||||| |  | ||||||||||    
T  26647800 gattgtttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttt 26647701  T
Q  295 tctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    || |||||||   |||||||||||| || | | |||||| ||| |||||||||||||| |||| ||||| ||||||| ||||    
T  26647700 tccaagcaatgtctttagtctcattgaatcgaggcacatcactcggaacatcttgatccattccaaattgcatagcaactct 26647619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 200 - 376
Target Start/End: Complemental strand, 19990316 - 19990140
Alignment:
Q  200 cttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttctaa 299  Q
    ||||||||||  |||||||||  |||||||||||| |||||| || || | ||||||||||| || || |||| ||||| |  ||  |||||||| | ||    
T  19990316 cttccaccactctgcataacgagtggtaacatctgcctcaaacaacctcgatggaaaatacacatgttcatcagatatgggcctgttgtagttttcccaa 19990217  T
Q  300 gcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||  |||| ||||||||| |||||| |||| |||||||||| ||||||||| |||| ||||| || |||| ||||    
T  19990216 gcaacagattcagtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactct 19990140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 345
Target Start/End: Original strand, 20007596 - 20007744
Alignment:
Q  197 ttgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttc 296  Q
    ||||||||||||| ||||||| ||  ||   ||| ||| ||||||  ||||||||||||||||||||||||||||| |||| ||  |  | ||||| |||    
T  20007596 ttgcttccaccactttgcatatcgtgtgcgtacagctgcctcaaaatatcttggtggaaaatacaaatttttatcagatataagcctaaaatagttcttc 20007695  T
Q  297 taagcaattgatttagtctcatttaacctaagcacataacttggaacat 345  Q
     |||||||  ||||||||||||| |||||| |||||| | |||||||||    
T  20007696 caagcaatgaatttagtctcattgaacctaggcacattagttggaacat 20007744  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 357
Target Start/End: Complemental strand, 19849807 - 19849630
Alignment:
Q  180 ttgcaacctaatgtcgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatga 279  Q
    |||||||| |||  ||| |||||||||||| ||||||||||   ||||||||| | ||| || |  || |||||||||||||||  |||||||   | |     
T  19849807 ttgcaacccaataccgagtgcttccaccactttgcataacgtacggtaacatcagcctcgaaaagcctcggtggaaaatacaaacgtttatcatggacgg 19849708  T
Q  280 gattgcagtagtttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattc 357  Q
    |  |||| ||||||| | |||||||   |||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  19849707 gtctgcaatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattc 19849630  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 20032689 - 20032735
Alignment:
Q  52 taaaagcatagcaaaatatgttttagtcatgccaatactactaaaga 98  Q
    ||||||||||||||||||||| |||||||||| |||  |||||||||    
T  20032689 taaaagcatagcaaaatatgtattagtcatgctaatcttactaaaga 20032735  T

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Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 22655640 - 22655812
Alignment:
Q  197 ttgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagtttttc 296  Q
    |||||||||||||||||||||| |  |||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||| |  ||||||||||||||    
T  22655640 ttgcttccaccaccttgcataatgtgtggtaacatctatctcaaataatcttggtggaaaatacaagtttttatcagatatgggtctgcagtagtttttc 22655739  T
Q  297 taagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatag 369  Q
     |||||||  ||||||||||||| ||||||   |||||||  ||||||||||||||||||| ||||| |||||    
T  22655740 caagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatag 22655812  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 376
Target Start/End: Complemental strand, 11544778 - 11544685
Alignment:
Q  283 tgcagtagtttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||||| |||||| ||||||| | || | ||||||| || ||| ||||| ||  ||||||||||||||| |||| ||||| ||||||| ||||    
T  11544778 tgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactct 11544685  T

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Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 196 - 376
Target Start/End: Complemental strand, 1718015 - 1717835
Alignment:
Q  196 attgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatcaaatatgagattgcagtagttttt 295  Q
    |||||||||||||||||||||||||   |||||||| |  |||||| ||||| | |||||||||||  ||||||||| ||||| |  ||||||||| |||    
T  1718015 attgcttccaccaccttgcataacgtgaggtaacatttccctcaaaaaatctcgatggaaaatacatttttttatcagatatgggcctgcagtagtgttt 1717916  T
Q  296 ctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    | ||||||| ||||||| |||||| || ||| |||||| |||||||||||||||||| |||| ||||| ||||||| ||||    
T  1717915 ccaagcaatggatttagcctcattgaatctaggcacatcacttggaacatcttgatccattccaaattgcatagcaactct 1717835  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 6397102 - 6397180
Alignment:
Q  194 cgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttatca 272  Q
    |||||||||| ||||| |||||||| || | |||||||| | |||||| | ||||||||||||||||||||||||||||    
T  6397102 cgattgcttctaccactttgcataatgcatagtaacatcagcctcaaacagtcttggtggaaaatacaaatttttatca 6397180  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 12579410 - 12579485
Alignment:
Q  195 gattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttat 270  Q
    ||||||||||||||| || |||||||| |||||| ||||| |||||| | || ||||| |||||||||||||||||    
T  12579410 gattgcttccaccactttacataacgcatggtaatatctgcctcaaacagtcatggtgcaaaatacaaatttttat 12579485  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 12495311 - 12495388
Alignment:
Q  193 tcgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttat 270  Q
    |||||||||||||| || || |||||||| |||||| ||||| |||||| | || ||||| |||||||||||||||||    
T  12495311 tcgattgcttccacaactttacataacgcatggtaatatctgcctcaaacagtcatggtgcaaaatacaaatttttat 12495388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 12519115 - 12519192
Alignment:
Q  193 tcgattgcttccaccaccttgcataacgcttggtaacatctggctcaaataatcttggtggaaaatacaaatttttat 270  Q
    ||||||||||||||||| || |||||||| ||||||  |||| |||||| | || ||||| |||||||||||||||||    
T  12519115 tcgattgcttccaccactttacataacgcatggtaatttctgcctcaaacagtcatggtgcaaaatacaaatttttat 12519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 39191386 - 39191479
Alignment:
Q  283 tgcagtagtttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctct 376  Q
    ||||||| |||||| ||||||| | || ||||||||| || ||| ||||| ||  ||||||||||||||| |||| ||||| ||||||| ||||    
T  39191386 tgcagtaatttttccaagcaatggtttcagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactct 39191479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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