View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0643_low_9 (Length: 476)
Name: NF0643_low_9
Description: NF0643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0643_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38434741 - 38434496
Alignment:
| Q |
1 |
aaactttgtcaaggaaaagtgatgaaacctcaagaaattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatg |
100 |
Q |
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| T |
38434741 |
aaactttgtcaaggaaaagtgatgaaacctcaagaaattgattgctaactcactactgcaattgaaacgtcctcacactaccatccaaaaacacatgatg |
38434642 |
T |
|
| Q |
101 |
gacaagtgtaaaacaatgttccaaggacttcttgaagaaacaatagcttccttatgtaattaactaattattaatttcaatgaaacacagtcaaaagcta |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
38434641 |
gacaagtataaaacaatgttccaaggacttcttgaagaaacaatagcttccttatg--------tgattattaatttcaatgaaacacagtcaaaagcta |
38434550 |
T |
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| Q |
201 |
aaggtctacttaaatggaggcttaattgcactttaaactcaccaaatatcatga |
254 |
Q |
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| T |
38434549 |
aaggtctacttaaattgaggcttaattgcactttaaactcaccaaatatcatga |
38434496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 38434426 - 38434367
Alignment:
| Q |
324 |
gtagtccatctcccgattttgaagcctctcaattttgtctaaaatttactttgagatgat |
383 |
Q |
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| T |
38434426 |
gtagtccatctcccgattttgaagcctctcaattttgtctaaaatttactttgagatgat |
38434367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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