View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0644_low_2 (Length: 369)
Name: NF0644_low_2
Description: NF0644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0644_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 360
Target Start/End: Complemental strand, 2764817 - 2764531
Alignment:
| Q |
97 |
gatagtgttatttatttcttccacttgctcttttctttttctt------aaatcctcctctcctttcctctcatgtctcgcaaataaagccataagtttg |
190 |
Q |
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| T |
2764817 |
gatagtgttatttatttcttccacttgctcttttctttttctttttctcaagtcctcctctcctttcctctcatgtctcgcaaataaagccataagtttg |
2764718 |
T |
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| Q |
191 |
gcacatatttttatttacctcaatgaaaggtggatatagttatctttattggggagttgacatcaataaaaaatcatacagttatccaactttttctttt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2764717 |
gcacatatttttatttacctcaatgaaaggtggatatagttatctatattggggagttgacatcaataaaaaatcatacagttatccacctttttctttt |
2764618 |
T |
|
| Q |
291 |
gcgttaatccttaggtttc-----------------taagtcgaagtttgtcgtccatgaggtaagaatagcctgaccaagtattat |
360 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2764617 |
gcgttaatccttaggtttctaggagaaagaaccctataagtcgaagtttgccgtccatgaggtaagaatagcctgaccaagtattat |
2764531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 308
Target Start/End: Complemental strand, 2801966 - 2801752
Alignment:
| Q |
97 |
gatagtgttatttatttcttccacttgctcttttctttttcttaaatcctcctctcctttcctctcatgtctcgcaaataaagccataagtttggcacat |
196 |
Q |
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||||||||||||| |||||| |||||| ||||||||||||| || |||||| ||||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
2801966 |
gatagtgttatttttttctttcacttgttcttttctttttccaaagtcctcccctcctttcctctcttgtcccgcaaataaagcctaaagtttggcacat |
2801867 |
T |
|
| Q |
197 |
atttttatttacc--tcaatgaaaggtggatatagttatctttattggggagttgacatcaataaaaaa-tcatacagttatccaactttttcttttgcg |
293 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| | |
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| T |
2801866 |
atttttatttacccatcaataaaaggtggatatagttatctatattggggagttgacatcaataaaaaattcatacagttatcaacttttttcttttgtg |
2801767 |
T |
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| Q |
294 |
ttaatccttaggttt |
308 |
Q |
| |
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||||||||||||||| |
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| T |
2801766 |
ttaatccttaggttt |
2801752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 2801733 - 2801689
Alignment:
| Q |
310 |
taagtcgaagtttgtcgtccatgaggtaagaatagcctgaccaag |
354 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
2801733 |
taagtcgaagtttgtcgcccatgaggtaaaaatagcttgaccaag |
2801689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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