View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0644_low_3 (Length: 342)
Name: NF0644_low_3
Description: NF0644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0644_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 90 - 329
Target Start/End: Complemental strand, 2707148 - 2706909
Alignment:
| Q |
90 |
tatagtttgagttaaacttgcgtatatttatgccctttattttttggcttaaaatatacatgtccctaatttccctctcttgtgttcaacgctcaaagaa |
189 |
Q |
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| T |
2707148 |
tatagtttgagttaaatttgcgtatatttatgccctttattttttggcttaaaatatacatgtccctaatttccctctcttgtgttcaacgctcaaagaa |
2707049 |
T |
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| Q |
190 |
ccaactccatcttaaggtaccttattttgtcacttcttcttgttcctataaggcgattaacactatgatacctatcaaatcatctttcatcttataactt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2707048 |
ccaactccatcttaaggtaccttattttgtcacttcttcttgttcctataaggcgattaacactatgatacctatcaaatcatctttcatcttataactt |
2706949 |
T |
|
| Q |
290 |
cattatattggtagatgagatgttttaacctttttccttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2706948 |
cattatattggtagatgagatgttttaacctttttccttc |
2706909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 2707199 - 2707167
Alignment:
| Q |
30 |
aaaataagggagaggaaaatctagtttgagttg |
62 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2707199 |
aaaataagggagaggaaaatctagtttgagttg |
2707167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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