View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0644_low_5 (Length: 314)
Name: NF0644_low_5
Description: NF0644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0644_low_5 |
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| [»] scaffold0190 (2 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 14104 - 13909
Alignment:
| Q |
30 |
tatagatcatccacgatgtcaaaggcatggtggacaatgctatgacaaagattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacat |
129 |
Q |
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| T |
14104 |
tatagatcatccacgatgtcagaggcatggtggaaaacgctatgacaaagattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacat |
14005 |
T |
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| Q |
130 |
ccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggaggagtaggagtccacaggagtaggcttttttcattatgacatttgtaggtttt |
229 |
Q |
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| T |
14004 |
ccgacaacagtatcgcgtgctagaggagctgtcggctccgattaggaggagtaggagtccacagga----gcttttttcattatgacatttgtagttttt |
13909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 12613 - 12673
Alignment:
| Q |
221 |
gtaggttttccagcttgtgtgggagggtggttttaattagctctatacttaatttgatccc |
281 |
Q |
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| T |
12613 |
gtaggttttccagcttgtgtgggagggtggttttaattagctctatacttaatttgatccc |
12673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 2641102 - 2641207
Alignment:
| Q |
52 |
aggcatggtggacaatgctatgacaaagattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgcta |
151 |
Q |
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| T |
2641102 |
aggcatagtggacagcgctatgatggagtttcatgatgtgtattcaaatcttgttgttgtcggcgttatggagatcatccggcaacagtatcgtgtgctg |
2641201 |
T |
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| Q |
152 |
gaggag |
157 |
Q |
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| T |
2641202 |
gaggag |
2641207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 26149051 - 26149155
Alignment:
| Q |
87 |
atgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggaggagtaggag |
186 |
Q |
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||||||||||||||| |||||||| | || |||||||| |||||||||| ||||||| ||| | |||||| | |||||||| |||| |||||||| |
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| T |
26149051 |
atgtgtattcaaatcatgttgttgaccgcgttatggagaccatccgacaatagtatcgtgtgttggaggaggtgccggctccgcggaggaagagtaggat |
26149150 |
T |
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| Q |
187 |
tccac |
191 |
Q |
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||||| |
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| T |
26149151 |
tccac |
26149155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 22009527 - 22009647
Alignment:
| Q |
79 |
gattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggagg |
178 |
Q |
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||||| ||| |||||||||||| ||| ||||||| ||||||||||| |||||||||||| ||||||||| | |||||| |||||||| ||| | |
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| T |
22009527 |
gattcctgacgtgtattcaaattctgctgttgcccgcattatggagaccatccgacaacaatatcgcgtgttggaggaggttccggctccgcggaggggt |
22009626 |
T |
|
| Q |
179 |
agtaggagtccacaggagtag |
199 |
Q |
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||||||||||||| ||||||| |
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| T |
22009627 |
agtaggagtccacgggagtag |
22009647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 22185702 - 22185822
Alignment:
| Q |
79 |
gattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggagg |
178 |
Q |
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||||| ||| || ||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| | |||||| |||||||| ||| | |
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| T |
22185702 |
gattcctgacgtttattcaaatcctgttgttgcccgcattatggagaccattcgacaacaatatcgcgtgttggaggaggttccggctccgcggaggggt |
22185801 |
T |
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| Q |
179 |
agtaggagtccacaggagtag |
199 |
Q |
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||||||||||||| ||||||| |
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| T |
22185802 |
agtaggagtccacgggagtag |
22185822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 43782384 - 43782328
Alignment:
| Q |
173 |
aggaggagtaggagtccacaggagtaggcttttttcattatgacatttgtaggtttt |
229 |
Q |
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||||||||||||||||||| |||||||| |||| ||||||||| ||||||| |||| |
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| T |
43782384 |
aggaggagtaggagtccacgggagtagggttttggcattatgacttttgtagttttt |
43782328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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