View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_high_10 (Length: 409)
Name: NF0645_high_10
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 36844345 - 36844711
Alignment:
| Q |
30 |
atcttctggatgaaactagtaaggttcttgataacatcagttgtatccacatgtctctgatttgatgtttccataaactcgtgttgctgttaagcaattt |
129 |
Q |
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| T |
36844345 |
atcttctggatgaaactagtaaggttcttgataacatcagttgtatccacatgtctccgatttgatgtttccataaactcttgttgcagttgaacaattt |
36844444 |
T |
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| Q |
130 |
ttgagagtttcttcccttgtgactacaacagaagatctagaagttgcgggacgatcaaactgaataggttccttaggaataccaaatgaagatgcaacag |
229 |
Q |
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| T |
36844445 |
ttgagagtttcttcccttgtgactacaacagaagatctagaagttgcgggacgatcaaactgaataggttccttaggaataccaaatgaagatgcaacag |
36844544 |
T |
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| Q |
230 |
attgaaattcttttctatttacatcatcatctaatgccttagatttcttggaaggcacttgattacttaaaggtgctgatctcttctttgactcaggagc |
329 |
Q |
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| T |
36844545 |
attgaaattcttttctatttacatcatcatctaataccttagatttcttggaaggcacttgattacttaaaggtgctgatctcttctttgactcaggagc |
36844644 |
T |
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| Q |
330 |
agtgatggcactagcttcctgtgctatttcttcttccatcttcttcatatactcctttactatatct |
396 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36844645 |
agtgatagcactagcttcctgtgctatttcttcttccatcttcttcatatactcctttactatatct |
36844711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 18930070 - 18930274
Alignment:
| Q |
30 |
atcttctggatgaaactagtaaggttcttgataacatcagttgtatccacatgtctctgatttgatgtttccataaa---------ctcgtgttgctgtt |
120 |
Q |
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| T |
18930070 |
atcttctggaccaaactggtaaggttcttgataaaatcagttgtatccgcatgtctctgatttgatgtatccataaaagctatcaactcttgtcgccgtt |
18930169 |
T |
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| Q |
121 |
aagcaatttttgagagtttcttcccttgtgactacaacagaagatctagaagttgcgggacgatcaaactgaataggttccttaggaataccaaatgaag |
220 |
Q |
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| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
18930170 |
gaacaatttttgagagtttcttcccttgtgactacagcagaagttctagaagttgtaggacgatcaaactgaagaggttccttaggaatactaaatgaag |
18930269 |
T |
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| Q |
221 |
atgca |
225 |
Q |
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||||| |
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| T |
18930270 |
atgca |
18930274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 18930273 - 18930348
Alignment:
| Q |
251 |
catcatcatctaatgccttagatttcttggaaggcacttgattacttaaaggtgctgatctcttctttgactcagg |
326 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
18930273 |
catcatcgtctaataccttagatttcttggaaggcacttgattacttaaagatactgatctcttctttgactcagg |
18930348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 18930355 - 18930400
Alignment:
| Q |
351 |
tgctatttcttcttccatcttcttcatatactcctttactatatct |
396 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18930355 |
tgctttttcttcttccatcttcttcatatactcctttactatatct |
18930400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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