View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_high_27 (Length: 289)
Name: NF0645_high_27
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4765320 - 4765536
Alignment:
| Q |
1 |
atttataaatctaatcatataaataatgttttacaaacagtgtgaatccataatatgctatagcaaaaagtgagttatggaatgtcagaaaaaatattct |
100 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765320 |
atttataaatctaaccacataaataatgttttacaaacagtgtgaatccataatatggtatagcaaaaagtgagttatggaatgtcagaaaaaatattct |
4765419 |
T |
|
| Q |
101 |
taatgaagagaaacaacattttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccattta |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4765420 |
taatgaagagaaaaaacattttaggtagggaatatacatctaacacatgacaacctttgagttgtcagggttgttattgaggtacatatgacaccattta |
4765519 |
T |
|
| Q |
201 |
tgcttctggtttatttc |
217 |
Q |
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|
||||||||||||||||| |
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| T |
4765520 |
tgcttctggtttatttc |
4765536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 35780851 - 35780768
Alignment:
| Q |
66 |
aaaagtgagttatggaatgtcagaaaaaat-attcttaatgaagagaaacaacattttaggtagggaatatacatctaacacatgac |
151 |
Q |
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|||| ||||| ||||||||||| ||||||| || ||||| |||| |||| |||| |||||||||||| |||||||||||||||| |
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| T |
35780851 |
aaaattgagtaatggaatgtcaaaaaaaattatacttaa---agagcaacacaatttaaggtagggaatacacatctaacacatgac |
35780768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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