View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_high_29 (Length: 272)
Name: NF0645_high_29
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 12106180 - 12106415
Alignment:
| Q |
27 |
tggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcat |
126 |
Q |
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| T |
12106180 |
tggtgttgtcgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaaaattgcataatcat |
12106279 |
T |
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| Q |
127 |
gtagtgtgtgctataattatgttcaatgctaactagccnnnnnnnnngttggtttcaaatttgtttaataagtataaacttatttcttgctaactttata |
226 |
Q |
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| T |
12106280 |
gtagtgtgtgctataattatgttcaatgctaactagcctttttttttgttggtttcaaatttgttttataagtataaacttatttcttgctaactttata |
12106379 |
T |
|
| Q |
227 |
ctatacctatttattggtttgtgttttggacctttg |
262 |
Q |
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| T |
12106380 |
ttatacctatttgttggtttgtgttttggacctttg |
12106415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 12094705 - 12094961
Alignment:
| Q |
23 |
ttactggtgttgccgtctaactttatctcttttatgtagagcg--------------ccgaagaaaacaaagaagtgagcagcatacccagaaattcaaa |
108 |
Q |
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| T |
12094705 |
ttactggtgttgccgtctaactttatctcttttatgtacagcatttgaataagaggaccgaagaaaaccaagaagtgagaagcataaccagaaaatcaaa |
12094804 |
T |
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| Q |
109 |
ggaaaattgcataatcatgtagtgtgtgctataattatgttcaatgctaactagcc---nnnnnnnnngttggtttcaaatttgtttaataagtataaac |
205 |
Q |
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| T |
12094805 |
ggaaaagtgcataatcatgtagtgtgtgctataatagtgttcaatgctaaccagcctcatttttttttgttggtttcgactttattttataagtataaac |
12094904 |
T |
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| Q |
206 |
ttatttcttgctaactttatactatacctatttattggtttgtgttttggacctttg |
262 |
Q |
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| T |
12094905 |
ttatttcttgcgaactttatattatacctatttgttggtttgtgttttggacctttg |
12094961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 10675926 - 10675824
Alignment:
| Q |
10 |
tagaatttctgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaag |
109 |
Q |
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| T |
10675926 |
tagaatttctgtcttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagagaaccaagaagtgagcagcataccaagaaattcaaag |
10675827 |
T |
|
| Q |
110 |
gaa |
112 |
Q |
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| T |
10675826 |
gaa |
10675824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12106106 - 12106165
Alignment:
| Q |
1 |
tgagtttgatagaatttctgtgttactggtgttgccgtctaactttatctcttttatgta |
60 |
Q |
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| T |
12106106 |
tgagtttggtagaatttctgtgttactggtgttgccgtctaactttatctgttttatgta |
12106165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 1454505 - 1454437
Alignment:
| Q |
186 |
tttgtttaataagtataaacttatttcttgctaactttatactatacctatttattggtttgtgttttg |
254 |
Q |
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| T |
1454505 |
tttgttttattagtataaacttatttcttgctaactttctattataccgatttgttagtttgtgttttg |
1454437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 1458835 - 1458744
Alignment:
| Q |
19 |
tgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
112 |
Q |
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| T |
1458835 |
tgtgttactggcgttatcgtctaattgtatctcttttatgcagagcgc--aaaaagaccaagaactgagcatcatacccagaaattcaaaggaa |
1458744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 10675803 - 10675756
Alignment:
| Q |
115 |
ttgcataatcatgtagtgtgtgctataattatgttcaatgctaactag |
162 |
Q |
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| T |
10675803 |
ttgcatgatcatgtagtgtgtgctataattgtgttgagtgctaactag |
10675756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 26592413 - 26592475
Alignment:
| Q |
36 |
cgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaa |
102 |
Q |
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| T |
26592413 |
cgtctaactttatctcttttat----agcgccgaagaaaaccaagaagtgagcagcatatccagaaa |
26592475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 12155758 - 12155667
Alignment:
| Q |
19 |
tgtgttactggtgttgccgtctaactttatctcttttatgtagagcgccgaagaaaacaaagaagtgagcagcatacccagaaattcaaaggaa |
112 |
Q |
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| T |
12155758 |
tgtgttactggtattgtcgtctaactttatttatt--atgtagagcgccaaagaaaaccaagaattaaacatcataccaagaaattcaaaggaa |
12155667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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