View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_high_3 (Length: 584)
Name: NF0645_high_3
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 30 - 295
Target Start/End: Original strand, 45062862 - 45063104
Alignment:
| Q |
30 |
aatatatattgatcgtacttatttaattttatttgtggtaaaggttgctctctattaatgaaattgacttctaaatattatgttatagattatcaggtag |
129 |
Q |
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| T |
45062862 |
aatatatattgatcgtacttatttaatttaatttgtggtaaagattgctctctattaatgaatttgacttcta----------------------ggtag |
45062939 |
T |
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| Q |
130 |
aaggggcaacagttcttgcagccagagtgtagacctttttataagtgaatgctttcttaagggacaatgtaattaaatggcttgggatattcatgctttt |
229 |
Q |
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| T |
45062940 |
aaggggcaacagttcttgcagccagagtgtagacctttttatgagtgaatgttttattaagggacaatgtaattaaatggctagggatattcatgctttt |
45063039 |
T |
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| Q |
230 |
ttagccttgagatattctctatttaagcaaaaacattgtccacacaactcctttttaccgcacttt |
295 |
Q |
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| T |
45063040 |
ttagccttgagatattctctatttaagc-aaaacgttgtccacacaactcctttttaccgcacttt |
45063104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 469 - 572
Target Start/End: Original strand, 45063180 - 45063283
Alignment:
| Q |
469 |
aatttgggtttaatttgagttctttttatcttctcattttcaacatgatttatgaataaaaatttagaagaggttaccaagttcttttcctcatcactga |
568 |
Q |
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| T |
45063180 |
aatttgggtttaatttgagttctttttatcttctcattttcaacatgatttatgaataaaaatttagaagaggttacccagttcttttcctcatcactga |
45063279 |
T |
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| Q |
569 |
tatt |
572 |
Q |
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|||| |
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| T |
45063280 |
tatt |
45063283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 45063099 - 45063185
Alignment:
| Q |
349 |
cacttttgtgggttgaattaaagttttgtggcgcaacattttgccttcaaactcctatcgaggtaaaataaccatcttctcaatttg |
435 |
Q |
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| T |
45063099 |
cacttttttgggttgaattgaagttttgtggcgcaacattttgccttcaaactcctttcgaggtaaaataaccatgttctcaatttg |
45063185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 48491266 - 48491109
Alignment:
| Q |
55 |
attttatttgtggtaaaggttgctctctattaatgaaattgacttctaaatattatgttatagattatcaggtagaaggggcaacagttcttgcagccag |
154 |
Q |
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|||| ||||||||| || |||| ||| | |||||||| ||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||| |
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| T |
48491266 |
atttaatttgtggttaatgttgttctatcttaatgaatttgacttctaaatattaagttactgattttcaggttgaaggggcaacagttcttgcagccag |
48491167 |
T |
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| Q |
155 |
agtgtagacctttttataagtgaatgctttcttaagggacaatgtaattaaatggctt |
212 |
Q |
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|| |||||||||||||| |||||||||||||| ||||| | ||||||||||||||||| |
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| T |
48491166 |
agagtagacctttttatgagtgaatgctttctaaaggggctatgtaattaaatggctt |
48491109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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