View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_high_39 (Length: 229)
Name: NF0645_high_39
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_39 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12106474 - 12106701
Alignment:
| Q |
1 |
taattgcattctaatacaattaactgtatacaagtatatctattccgatatttaaccgggattcttcaccatatgagattcacttaggcattgcattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
12106474 |
taattgcattctaatacaattaactgtatacaagaatatctattccgatatttaac-gggattcttcaccatatgagattcactcaggcattgcatttat |
12106572 |
T |
|
| Q |
101 |
tatcttgattaagccagttgagatctgatgtagatgagaactcttggttacctctattcataattcaggatgcatgaagtctatatctgctagaagggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12106573 |
tatcttgattaagccagttgagatctgatgtagatgagaactcttggttacatctattcataattcaggatgcatgaagtctatatctgctagaagggtt |
12106672 |
T |
|
| Q |
201 |
ggttctctactcttttacgatctgatttc |
229 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
12106673 |
ggttctctactcttttacgatgtgatttc |
12106701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 1454323 - 1454234
Alignment:
| Q |
68 |
accatatgagattcacttaggcattgcattcattatcttgattaagccagttgagatctgatgtagatgagaactcttggttacctctat |
157 |
Q |
| |
|
|||||||| |||||||||| | ||| || |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1454323 |
accatatgcgattcacttacgtattacaatcattatcttcattgagccagttgagatctgatgtagatgaaaactcttggttacctctat |
1454234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12095022 - 12095096
Alignment:
| Q |
1 |
taattgcattctaatacaattaactgtatacaagtatatctattccgatatttaaccgggattcttcaccatatg |
75 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||||| |
|
|
| T |
12095022 |
taatcgcattctaatacaattaactgtatacaagtatatctacaccaatgtttacccgggattctttaccatatg |
12095096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 1458439 - 1458361
Alignment:
| Q |
80 |
tcacttaggcattgcattcattatcttgattaagccagttgagatctgatgtagatgagaactcttggttacctctatt |
158 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||| |||||||| ||||||||||| | | | |||||||||||||||||| |
|
|
| T |
1458439 |
tcacttagaaattacattcattatcttcatttagccagtttgaatctgatgtagttaatagctcttggttacctctatt |
1458361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3320 times since January 2019
Visitors: 4032