View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_high_5 (Length: 526)
Name: NF0645_high_5
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 30 - 518
Target Start/End: Complemental strand, 36560313 - 36559825
Alignment:
| Q |
30 |
atatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgcc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560313 |
atatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgcc |
36560214 |
T |
|
| Q |
130 |
actcnnnnnnnattcaacacaaataacctgcaaataaccagttttcnnnnnnngggctattctaattgataatattaagcaagaaagtataatctctttt |
229 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560213 |
actctttttttattcaacacaaataacctgcaaataaccagttttcaaaaaaagggctattctaattgataatattaagcaagaaagtataatctctttt |
36560114 |
T |
|
| Q |
230 |
acttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctcccttt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560113 |
acttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaaaatatacattcatcaaatgttaaaaaatctcccttt |
36560014 |
T |
|
| Q |
330 |
aaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36560013 |
aaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgctctgttttaggcattttaaatagtttgtgtatgtggt |
36559914 |
T |
|
| Q |
430 |
catactttgtatatgttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatctgagctctctgct |
518 |
Q |
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| T |
36559913 |
catactttgtatatgttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgtatattgttttatcttagctctctgct |
36559825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 194 - 518
Target Start/End: Original strand, 36551996 - 36552320
Alignment:
| Q |
194 |
attgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36551996 |
attgataatattaagcaagaaagtataatctcttttacttgattgacattattctaatatatcttttttgtaatcttcataaagaaaatcaaagacacaa |
36552095 |
T |
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| Q |
294 |
aatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgct |
393 |
Q |
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| T |
36552096 |
aatatacattcatcaaatgttaaaaaatctccctttaaaatagattttcaaatctttcaccttgttttaaatgctctgtttagtttggttgtccaatgct |
36552195 |
T |
|
| Q |
394 |
ctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgta |
493 |
Q |
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| T |
36552196 |
ctgttttaggcattttaaatagtttgtgtatgtggtcatactttgtatatgttaaaatatagtagctggagaaaatgaagacatactgattgtcaccgta |
36552295 |
T |
|
| Q |
494 |
tattgttttatctgagctctctgct |
518 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
36552296 |
tattgttttatcttagctctctgct |
36552320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 36548002 - 36548147
Alignment:
| Q |
30 |
atatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgcc |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36548002 |
atatacccaatgcgaacaccgattgtatttgttggctttgtgtgactcttgttgtattcgtgtagacacttttccacctttgaaataactacttattgcc |
36548101 |
T |
|
| Q |
130 |
actcnnnnnnnattcaacacaaataacctgcaaataaccagttttc |
175 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
36548102 |
actctttttttattcaacacaaataacctgcaaataaccagttttc |
36548147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 219
Target Start/End: Complemental strand, 10110171 - 10110136
Alignment:
| Q |
184 |
ggctattctaattgataatattaagcaagaaagtat |
219 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
10110171 |
ggctattataattgataatattaagcaagaaagtat |
10110136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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