View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_low_1 (Length: 736)
Name: NF0645_low_1
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 374 - 721
Target Start/End: Original strand, 42346299 - 42346644
Alignment:
| Q |
374 |
aacggctctattgactatactatacattcaatagacatatattcacccgcattaaaaattatgattgcatgccacggcattaatggcaaatatgtactca |
473 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||| |||| |
|
|
| T |
42346299 |
aacggctctatcaactatactatacattcaata----tatatccacccgcattaaaaattatgattgcatgccacagcatcagtggcaaatatgttctca |
42346394 |
T |
|
| Q |
474 |
aaatctaaaaaaggtaaggacattatttccctttaccttaatcccactacagaggttcaagggatccactt--cagtctttccatccgtgcttgaagcct |
571 |
Q |
| |
|
||||||| |||| ||||| |||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
42346395 |
aaatctagggaaggaaaggaaattaattccctttaccttaatcacgctacagagggtcaagggatccacttttcagccgttccatccgtgcttgaagccc |
42346494 |
T |
|
| Q |
572 |
tgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctgatgctaaaggaatctgactatgaggaagtcca |
671 |
Q |
| |
|
||||||||| |||||||| | |||||| | ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
42346495 |
tgacaaagctttttcatctacaggatgtaccccaccttgtaaagtattttcagctccaacatgttctgatgcaagaggaatctgactatgaggaagtcca |
42346594 |
T |
|
| Q |
672 |
cggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgt |
721 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
42346595 |
tggttaaagttatcgttaacacttgtcaatggcctagtaccagattctgt |
42346644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 550 - 730
Target Start/End: Original strand, 8188465 - 8188645
Alignment:
| Q |
550 |
tttccatccgtgcttgaagccttgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctgatgctaaagg |
649 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8188465 |
tttccatccgtgcttgaagccctgacaaagccttttcatccatgggatgtccgccaccttacaaagtattctcagctccaacatgttctaatgctaaagg |
8188564 |
T |
|
| Q |
650 |
aatctgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccaaattctgtctctgctcc |
730 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8188565 |
aatatgactatgaggaagtccacggttcaagttgtcgataacacttgtcaatggcctagcaccagattctgtctgtgctcc |
8188645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2946 times since January 2019
Visitors: 4020