View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_10 (Length: 457)
Name: NF0645_low_10
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 209 - 399
Target Start/End: Original strand, 25100057 - 25100247
Alignment:
| Q |
209 |
cagtactattaatttatacgtgaacgtgcaaaatgtgagtaaagaagttactcatcagcttcaatctctttccactaacctacgtgtgattcattggttg |
308 |
Q |
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| T |
25100057 |
cagtactattaatttatacgtgaacgtgcaaaatgtgagtaaagaagttactcatcagcttcaatctctttccactaacctacgtgtgattcattgattg |
25100156 |
T |
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| Q |
309 |
aattcatgtgtctcctcattttatttttctaaattaattttttcttcaattgcaatgacaaaaagcctaacaaataacaaccaacgtaatt |
399 |
Q |
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| T |
25100157 |
aattcatgtgtctcctcattttatttttctaaattaattttttcttcaattgcaatgacaaaaagcctaacaaataataaccaacgtaatt |
25100247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 25099921 - 25100006
Alignment:
| Q |
75 |
atcaaacaacttcacaagtaaatatttctcaaaacatagtatgaaatttgactttcttcaacaaaagatgaatagtactattttcc |
160 |
Q |
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| T |
25099921 |
atcaaacaacttcacaagtaaatatttctcaaaacatagtatgaaatttgacttttttcaacaaaagataaatagtactattttcc |
25100006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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