View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0645_low_11 (Length: 450)
Name: NF0645_low_11
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 438
Target Start/End: Complemental strand, 36381264 - 36380856
Alignment:
| Q |
30 |
taaaagtcatttaaaactgtttcacctcactgtgggtttacaagggaaaaaaggcaaggaacaaaacttattcaagaaaaacaagaggcaagcatagttg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
36381264 |
taaaagtcatttaaaactgtttcacctcactgtgggtttacaagggaaaaaaggcaaggaacaaaacttattcaaaaaaaacaaaaggcaagcatagttg |
36381165 |
T |
|
| Q |
130 |
gaggattaaaacctaacaaaagttgcagcccattcttgtgatgtgtgagttgtcacatgcttgaaattaaactgatgccgtttttccctttcatcagctg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36381164 |
gaggattaaaacctaacaaaagttgcagcccattcttgtgacgtgtgagttgtcacatgcttgaaattaaactgatgccgtttttccctttcatcagctg |
36381065 |
T |
|
| Q |
230 |
gcatgtccaaagcataaccaatagaagcagcaacctctgtgatattccatggatttaccaagatagcaccagcaccaagagactgcgctgcacctgcaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36381064 |
gcatgtccaaagcataaccaatagaagcagcaacctctgtgatattccatggatttaccaagatagcaccagcaccaagagactgcgctgcacctgcaaa |
36380965 |
T |
|
| Q |
330 |
ctgatgacatttaaatagttcaatatttttgaatctcaaccaccaagtaatttttataataatataattggagatatcaaaatttagttatcttttttaa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36380964 |
ctgatgacatttaaatagttcaatatttttgaatctcaaccaccaagtaatttttataataatataattggagatatcaaaatttagttatcttttttaa |
36380865 |
T |
|
| Q |
430 |
aacaatatt |
438 |
Q |
| |
|
||||||||| |
|
|
| T |
36380864 |
aacaatatt |
36380856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3541 times since January 2019
Visitors: 4037