View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0645_low_15 (Length: 422)

Name: NF0645_low_15
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0645_low_15
NF0645_low_15
[»] chr3 (6 HSPs)
chr3 (29-386)||(45268809-45269163)
chr3 (323-365)||(5641613-5641655)
chr3 (323-357)||(48546202-48546236)
chr3 (323-357)||(53163623-53163657)
chr3 (323-355)||(8125668-8125700)
chr3 (323-359)||(29373454-29373490)
[»] scaffold1787 (1 HSPs)
scaffold1787 (323-366)||(429-472)
[»] chr7 (7 HSPs)
chr7 (323-366)||(14204301-14204344)
chr7 (323-386)||(21388552-21388615)
chr7 (323-386)||(47255060-47255123)
chr7 (323-357)||(21066915-21066949)
chr7 (323-360)||(27424868-27424905)
chr7 (323-355)||(15074911-15074943)
chr7 (329-365)||(25711158-25711194)
[»] chr5 (3 HSPs)
chr5 (323-386)||(39919071-39919134)
chr5 (323-357)||(12891586-12891620)
chr5 (323-357)||(26912862-26912896)
[»] chr4 (4 HSPs)
chr4 (323-366)||(15208551-15208594)
chr4 (323-369)||(19963811-19963857)
chr4 (323-357)||(33530822-33530856)
chr4 (323-356)||(42395256-42395289)
[»] chr2 (6 HSPs)
chr2 (323-386)||(38179223-38179286)
chr2 (323-365)||(1844846-1844888)
chr2 (326-376)||(20528163-20528213)
chr2 (323-357)||(44948625-44948659)
chr2 (325-357)||(32084873-32084905)
chr2 (329-365)||(32288408-32288444)
[»] chr1 (5 HSPs)
chr1 (323-366)||(14349673-14349716)
chr1 (323-357)||(33033155-33033189)
chr1 (323-357)||(42054362-42054396)
chr1 (325-366)||(35195637-35195678)
chr1 (329-357)||(24168614-24168642)
[»] chr8 (3 HSPs)
chr8 (323-369)||(13773387-13773433)
chr8 (323-360)||(43656065-43656102)
chr8 (322-366)||(14876600-14876644)
[»] chr6 (1 HSPs)
chr6 (323-356)||(14709028-14709061)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 29 - 386
Target Start/End: Complemental strand, 45269163 - 45268809
Alignment:
Q  29 atgaatgactgagtagtgagtactgtctgtaatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttttcacattccatgttagg 128  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45269163 atgaatgactgagtagtgagtactgtctataatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttttcacattccatattagg 45269064  T
Q  129 gaaactgagtgaggagtgtgacgtactcttttttattttgtggtggcatttgaaatttgagattgattcgtaaactcttgagtagcctgtactagcctag 228  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  45269063 gaaactgagtgaggagtgtgac--actcttttttattttgtggtggcatttgaaatttgagattgattcgtaaactcttgtgtagcctgtactaccctag 45268966  T
Q  229 ctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgacagtcacattaaaagtgattaaatgatttctaatgaattgca 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  45268965 ctactcttttctgcaaaccaaagctcagggcttcttggaagttggaacaagtaatcgaaagtcacattaaaagtgattaaatgatttccaatgaattgca 45268866  T
Q  329 tattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 386  Q
    ||||||||| || |||| ||||||||||||| | |||| |||||||||||| ||||||    
T  45268865 tattatatgcagagacc-gggttcgaacctcatgcactccatatttaaattatgtgag 45268809  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 5641655 - 5641613
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacac 365  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  5641655 attgcatattatatgcaggggccggggttcgaacctcggacac 5641613  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 48546202 - 48546236
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    ||||||||||||||||||||| |||||||||||||    
T  48546202 attgcatattatatgtagggatcggggttcgaacc 48546236  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 53163623 - 53163657
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||| ||||||||||||||    
T  53163623 attgcatattatatgtaggggccggggttcgaacc 53163657  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 8125668 - 8125700
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaa 355  Q
    ||||||||||||||| |||||||||||||||||    
T  8125668 attgcatattatatgcagggaccggggttcgaa 8125700  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 29373490 - 29373454
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctc 359  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  29373490 attgcatattatatgcaggggccggggttcgaacctc 29373454  T

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Target: scaffold1787 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 429 - 472
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||    
T  429 attgcatattatatgcaggggccggggttcgaacctcggacact 472  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 14204301 - 14204344
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    |||||||||||||||||||| | ||||||||||||||| |||||    
T  14204301 attgcatattatatgtaggggctggggttcgaacctcggacact 14204344  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 21388552 - 21388615
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 386  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  21388552 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 21388615  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 47255123 - 47255060
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 386  Q
    |||||||||||| || |||  |||||||||||||| || |||||||| | ||||||||||||||    
T  47255123 attgcatattatctgcaggagccggggttcgaaccccggacacttcacaattaaattgtgtgag 47255060  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 21066915 - 21066949
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||| ||||||||||||||    
T  21066915 attgcatattatatgtaggggccggggttcgaacc 21066949  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 27424868 - 27424905
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcg 360  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  27424868 attgcatattatatgcaggggccggggttcgaacctcg 27424905  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 15074943 - 15074911
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaa 355  Q
    ||||||||||||||| |||||||||||||||||    
T  15074943 attgcatattatatgcagggaccggggttcgaa 15074911  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 25711194 - 25711158
Alignment:
Q  329 tattatatgtagggaccggggttcgaacctcgtacac 365  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  25711194 tattatatgtaggggccggggttcgaacctcggacac 25711158  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 39919134 - 39919071
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 386  Q
    ||||||||||||||| |||  |||||||||||||| || ||||| || | ||||||||||||||    
T  39919134 attgcatattatatgcaggagccggggttcgaaccccggacactccacaattaaattgtgtgag 39919071  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 12891586 - 12891620
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||| ||||||||||||||    
T  12891586 attgcatattatatgtaggggccggggttcgaacc 12891620  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 26912862 - 26912896
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||| ||||||||||||||    
T  26912862 attgcatattatatgtaggggccggggttcgaacc 26912896  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 15208551 - 15208594
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    |||||||||||||| |||| |||||||||||||||||| |||||    
T  15208551 attgcatattatatataggaaccggggttcgaacctcggacact 15208594  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 19963811 - 19963857
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 369  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||||||    
T  19963811 attgcatattatatgcaggggtcggggttcgaacctcggacacttca 19963857  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 33530822 - 33530856
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    ||||||||||||||||||||| |||||||||||||    
T  33530822 attgcatattatatgtagggatcggggttcgaacc 33530856  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 42395256 - 42395289
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaac 356  Q
    |||||||||||||||||||| |||||||||||||    
T  42395256 attgcatattatatgtaggggccggggttcgaac 42395289  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 38179286 - 38179223
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaaattgtgtgag 386  Q
    ||||||| ||||||| |||| | ||||||||||||||| ||||| || | ||||||||||||||    
T  38179286 attgcattttatatgcaggggctggggttcgaacctcggacactccacaattaaattgtgtgag 38179223  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Original strand, 1844846 - 1844888
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacac 365  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||    
T  1844846 attgcatattatatgcaggggccggggttcgaacctcggacac 1844888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 20528213 - 20528163
Alignment:
Q  326 gcatattatatgtagggaccggggttcgaacctcgtacacttcatatttaa 376  Q
    |||| |||||||||||||| ||||||||||||||  |||||||| ||||||    
T  20528213 gcatgttatatgtagggactggggttcgaacctcagacacttcacatttaa 20528163  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 44948625 - 44948659
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    ||||||||||||||| |||||||||||||||||||    
T  44948625 attgcatattatatgcagggaccggggttcgaacc 44948659  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 32084873 - 32084905
Alignment:
Q  325 tgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||| ||||||||||||||    
T  32084873 tgcatattatatgtaggggccggggttcgaacc 32084905  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 32288408 - 32288444
Alignment:
Q  329 tattatatgtagggaccggggttcgaacctcgtacac 365  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  32288408 tattatatgtagggatcggggttcgaacctcggacac 32288444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 14349673 - 14349716
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    ||||||||||||||||||||| ||||||||||||| || |||||    
T  14349673 attgcatattatatgtagggatcggggttcgaaccccggacact 14349716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 33033155 - 33033189
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    ||||||||||||||| |||||||||||||||||||    
T  33033155 attgcatattatatgcagggaccggggttcgaacc 33033189  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 42054362 - 42054396
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||| ||||||||||||||    
T  42054362 attgcatattatatgtaggggccggggttcgaacc 42054396  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Complemental strand, 35195678 - 35195637
Alignment:
Q  325 tgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||    
T  35195678 tgcatattatatgcagggaccagggttcgaaccccgtacact 35195637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 24168642 - 24168614
Alignment:
Q  329 tattatatgtagggaccggggttcgaacc 357  Q
    |||||||||||||||||||||||||||||    
T  24168642 tattatatgtagggaccggggttcgaacc 24168614  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 13773433 - 13773387
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcgtacacttca 369  Q
    |||||||||||||||||||  |||||||||||||| || ||||||||    
T  13773433 attgcatattatatgtaggagccggggttcgaaccccggacacttca 13773387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 43656065 - 43656102
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaacctcg 360  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  43656065 attgcatattatatgtaggggtcggggttcgaacctcg 43656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 14876644 - 14876600
Alignment:
Q  322 aattgcatattatatgtagggaccggggttcgaacctcgtacact 366  Q
    |||||||||||||||| |||  ||||||||||||||||| |||||    
T  14876644 aattgcatattatatgcaggagccggggttcgaacctcggacact 14876600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 14709061 - 14709028
Alignment:
Q  323 attgcatattatatgtagggaccggggttcgaac 356  Q
    |||||||||||||||||||| |||||||||||||    
T  14709061 attgcatattatatgtaggggccggggttcgaac 14709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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