View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_18 (Length: 400)
Name: NF0645_low_18
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Complemental strand, 38822305 - 38821940
Alignment:
| Q |
30 |
atatatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccactt |
129 |
Q |
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| T |
38822305 |
atatatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattatttgtcctaccagtgccactt |
38822206 |
T |
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| Q |
130 |
gtttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataatacaatctta---ttatatga |
226 |
Q |
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| T |
38822205 |
gtttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataatacaatcttattattatatga |
38822106 |
T |
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| Q |
227 |
aattcatcacatggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactga |
326 |
Q |
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| T |
38822105 |
aattcatcacgtggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacgtcatggttcttagatactga |
38822006 |
T |
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| Q |
327 |
aatagaactttggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattcttc |
392 |
Q |
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| T |
38822005 |
aatagaactttggtggctttttaaattttgcaatctttgttattgatgtcaattggaatattcttc |
38821940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 38809213 - 38809150
Alignment:
| Q |
85 |
atttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtc |
149 |
Q |
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| T |
38809213 |
atttggatatagaaaaat-aaccatttgtcctaccggtgccacttgtttgtctaaactaatggtc |
38809150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 38809315 - 38809270
Alignment:
| Q |
30 |
atatatttctaacgacacagactatgaggtcagaaggatcatgcat |
75 |
Q |
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| T |
38809315 |
atatagttctaacgagacagattatgaggtcagaaggatcatgcat |
38809270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 35521716 - 35521768
Alignment:
| Q |
338 |
ggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattct |
390 |
Q |
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| T |
35521716 |
ggtgtcttttttgattttgaaatatttgctatcaatgtcaattggaatattct |
35521768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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