View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_19 (Length: 394)
Name: NF0645_low_19
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 6564870 - 6565233
Alignment:
| Q |
1 |
tgccatagtctaaacttgcgtactcgtggtcaatttgattttcaccgaaactcatggactacttaagtctaaccacttggttttgaatataggcttctca |
100 |
Q |
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| T |
6564870 |
tgccatagtctaaacttgcgtactcgtggtcaatttgattttcaccgaaactcatcgactacttaagtctaaccacttggttttgaatataggcttctca |
6564969 |
T |
|
| Q |
101 |
tgaagtaacataacatctcttagaaaaattgagaaaaataagaaattggtttaaaagcataacataaactaagtcttactttaacagtgaggaatgatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6564970 |
tgaagtaacataacatctcttagaaaaattgagaaaaataagaaattggtttaaaagcataacataaactaagt-ttactttaacagtgaggaatgatgt |
6565068 |
T |
|
| Q |
201 |
tttaattccaaatctgagaactatgttatttcatttctcatgagaaacatatagtctttgtccttccttctatctttctttctcatttcatacaaaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565069 |
tttaattccaaatctgagaactatgttatttcatttctcatgagaaacatatagtctttgtccttccttctatctttctttctcatttcatacaaaaacc |
6565168 |
T |
|
| Q |
301 |
gtagtttctacnnnnnnnttgtttctcacttaatgtgcaaagcaggacaagatggaaaaaggagg |
365 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565169 |
atagtttctacaaaaaaattgtttctcacttaatgtgcaaagcaggacaagatggaaaaaggagg |
6565233 |
T |
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