View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_2 (Length: 688)
Name: NF0645_low_2
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 98 - 427
Target Start/End: Complemental strand, 43802278 - 43801949
Alignment:
| Q |
98 |
tcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
197 |
Q |
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| T |
43802278 |
tcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
43802179 |
T |
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| Q |
198 |
gacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatccttatgcttctgcccttcactttgcacatgt |
297 |
Q |
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| T |
43802178 |
gacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtccttatgcttctgcccttcgctttgcacatgt |
43802079 |
T |
|
| Q |
298 |
gagcttcgttcatgttccttaattatcttccccaacacttggtctattgctttaccaattctcttgtacgtcctttttaatccctgacaatacaagctag |
397 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43802078 |
gagcttcgttcatgttccttaattatcttctccaacacttggtctattgctttaccaattctcttgtacttcctttttaatccctgacaatacaagctag |
43801979 |
T |
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| Q |
398 |
ataatttcggtcatgattggatatacaatt |
427 |
Q |
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| T |
43801978 |
ataatttcggtcatgattggatatacaatt |
43801949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 98 - 491
Target Start/End: Complemental strand, 43812847 - 43812452
Alignment:
| Q |
98 |
tcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttcgatcaac |
197 |
Q |
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|||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||||||| |
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| T |
43812847 |
tcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatgtttgttcgatcaat |
43812748 |
T |
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| Q |
198 |
gacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatccttatgcttctgcccttcactttgcacatgt |
297 |
Q |
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| T |
43812747 |
gacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtctatgaagtttttgtgtttctgcccttcattttgcacatgt |
43812648 |
T |
|
| Q |
298 |
gagcttcgttcatgttccttaattatcttccccaacacttggtctattgctttaccaattctcttgtacgtcctttttaatccctgacaatacaagctag |
397 |
Q |
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|| ||| ||||| ||||||||||||||||| | |||||||| || ||||||||| || || |||||||| | |||||||||||||||||||| |||||| |
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| T |
43812647 |
gaactttgttcacgttccttaattatcttctcaaacacttgatccattgctttagcagttttcttgtaccttctttttaatccctgacaataaaagctaa |
43812548 |
T |
|
| Q |
398 |
ataatttcggtcatgattggatatacaatttaattaagtgcttatggcatatatgtgttgatgtataagtta--tctataataaaagataaaatta |
491 |
Q |
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||||||| || ||||||||||||| || |||||||| || || | ||||||| ||||| ||||||| ||| ||||||| |||||||||||||| |
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| T |
43812547 |
ataatttaggccatgattggatatgcaggttaattaattggttgtagcatataagtgtttatgtatagtttatttctataacaaaagataaaatta |
43812452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 491
Target Start/End: Complemental strand, 5554938 - 5554859
Alignment:
| Q |
412 |
gattggatatacaatttaattaagtgcttatggcatatatgtgttgatgtataagttat--ctataataaaagataaaatta |
491 |
Q |
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||||||||| |||||||||| ||| || ||| |||||| ||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
5554938 |
gattggataaacaatttaataaagcgcatat--catatacgtgtttatgtataagttatttctataacaaaagataaaatta |
5554859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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