View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_21 (Length: 391)
Name: NF0645_low_21
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 391
Target Start/End: Original strand, 49765869 - 49766258
Alignment:
| Q |
2 |
gcatctcgaagaatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaac |
101 |
Q |
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| T |
49765869 |
gcatctctaataatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaac |
49765968 |
T |
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| Q |
102 |
tctttccaccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765969 |
tctttccaccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagt |
49766068 |
T |
|
| Q |
202 |
agatgaatttgaagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtgg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766069 |
agatgaatttgaagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtgg |
49766168 |
T |
|
| Q |
302 |
tggtggtcttgagcacggttcacagaagcaataccattagaattagcaactactccctttgatttaccttcacgttgagattcaactctt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766169 |
tggtggtcttgagcacggttcacagaagcaataccattagaactagcaactactccctttgatttaccttcacgttgagattcaactctt |
49766258 |
T |
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