View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0645_low_22 (Length: 391)
Name: NF0645_low_22
Description: NF0645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0645_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 49765877 - 49766258
Alignment:
| Q |
10 |
aataatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttcca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765877 |
aataatatctcttctattattctgatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttcca |
49765976 |
T |
|
| Q |
110 |
ccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49765977 |
ccacggttttgagaaactgtaacagaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaat |
49766076 |
T |
|
| Q |
210 |
ttgaagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766077 |
ttgaagatgaagatgatgtcatcatgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtc |
49766176 |
T |
|
| Q |
310 |
ttgagcacggttcacagaagcaataccattagaattagcaactactccctttgatttaccttcacgttgagattcaactctt |
391 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766177 |
ttgagcacggttcacagaagcaataccattagaactagcaactactccctttgatttaccttcacgttgagattcaactctt |
49766258 |
T |
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